Strain Fitness in Marinobacter adhaerens HP15 around HP15_1420

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1419 and HP15_1420 are separated by 153 nucleotidesHP15_1420 and HP15_1421 overlap by 1 nucleotidesHP15_1421 and HP15_1422 overlap by 4 nucleotides HP15_1419: HP15_1419 - ABC transporter periplasmic amino acid-binding protein, at 1,503,078 to 1,503,896 _1419 HP15_1420: HP15_1420 - putative amino acid ABC transporter permease protein, at 1,504,050 to 1,504,715 _1420 HP15_1421: HP15_1421 - ABC transporter, membrane spanning protein, at 1,504,715 to 1,505,368 _1421 HP15_1422: HP15_1422 - amino acid ABC transporter ATP-binding protein, at 1,505,365 to 1,506,087 _1422 Position (kb) 1504 1505Strain fitness (log2 ratio) -1 0 1 2at 1503.076 kb on - strandat 1503.125 kb on - strandat 1503.174 kb on + strand, within HP15_1419at 1503.294 kb on - strand, within HP15_1419at 1503.294 kb on - strand, within HP15_1419at 1503.319 kb on - strand, within HP15_1419at 1503.390 kb on - strand, within HP15_1419at 1503.392 kb on + strand, within HP15_1419at 1503.413 kb on - strand, within HP15_1419at 1503.471 kb on - strand, within HP15_1419at 1503.510 kb on - strand, within HP15_1419at 1503.536 kb on - strand, within HP15_1419at 1503.623 kb on + strand, within HP15_1419at 1503.703 kb on - strand, within HP15_1419at 1503.703 kb on - strand, within HP15_1419at 1503.778 kb on + strand, within HP15_1419at 1503.818 kb on + strandat 1504.008 kb on - strandat 1504.008 kb on - strandat 1504.100 kb on + strandat 1504.122 kb on - strand, within HP15_1420at 1504.251 kb on - strand, within HP15_1420at 1504.334 kb on - strand, within HP15_1420at 1504.417 kb on - strand, within HP15_1420at 1504.443 kb on + strand, within HP15_1420at 1504.523 kb on - strand, within HP15_1420at 1504.680 kb on - strandat 1504.755 kb on + strandat 1504.763 kb on - strandat 1504.767 kb on - strandat 1504.803 kb on + strand, within HP15_1421at 1504.916 kb on - strand, within HP15_1421at 1504.916 kb on - strand, within HP15_1421at 1505.026 kb on - strand, within HP15_1421at 1505.181 kb on + strand, within HP15_1421at 1505.203 kb on + strand, within HP15_1421at 1505.518 kb on - strand, within HP15_1422at 1505.549 kb on + strand, within HP15_1422at 1505.644 kb on + strand, within HP15_1422

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,503,076 - -0.2
1,503,125 - -0.0
1,503,174 + HP15_1419 0.12 -1.3
1,503,294 - HP15_1419 0.26 +2.0
1,503,294 - HP15_1419 0.26 +0.1
1,503,319 - HP15_1419 0.29 -0.3
1,503,390 - HP15_1419 0.38 -0.1
1,503,392 + HP15_1419 0.38 +0.0
1,503,413 - HP15_1419 0.41 +0.3
1,503,471 - HP15_1419 0.48 +0.1
1,503,510 - HP15_1419 0.53 -0.4
1,503,536 - HP15_1419 0.56 -0.4
1,503,623 + HP15_1419 0.67 -0.3
1,503,703 - HP15_1419 0.76 -0.8
1,503,703 - HP15_1419 0.76 -1.3
1,503,778 + HP15_1419 0.85 +0.4
1,503,818 + +0.3
1,504,008 - -0.8
1,504,008 - -0.5
1,504,100 + -0.6
1,504,122 - HP15_1420 0.11 -0.5
1,504,251 - HP15_1420 0.30 -0.9
1,504,334 - HP15_1420 0.43 -0.4
1,504,417 - HP15_1420 0.55 -0.8
1,504,443 + HP15_1420 0.59 -1.2
1,504,523 - HP15_1420 0.71 +0.0
1,504,680 - -0.4
1,504,755 + +1.1
1,504,763 - -0.3
1,504,767 - +0.7
1,504,803 + HP15_1421 0.13 -1.3
1,504,916 - HP15_1421 0.31 -0.1
1,504,916 - HP15_1421 0.31 +0.5
1,505,026 - HP15_1421 0.48 +0.1
1,505,181 + HP15_1421 0.71 -0.6
1,505,203 + HP15_1421 0.75 +0.4
1,505,518 - HP15_1422 0.21 -1.2
1,505,549 + HP15_1422 0.25 -0.4
1,505,644 + HP15_1422 0.39 -0.4

Or see this region's nucleotide sequence