Strain Fitness in Marinobacter adhaerens HP15 around HP15_1332

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1331 and HP15_1332 are separated by 25 nucleotidesHP15_1332 and HP15_1333 are separated by 49 nucleotides HP15_1331: HP15_1331 - pyruvate carboxylase subunit B, at 1,395,991 to 1,397,778 _1331 HP15_1332: HP15_1332 - sodium ion-translocating decarboxylase, beta subunit, at 1,397,804 to 1,399,126 _1332 HP15_1333: HP15_1333 - error-prone DNA polymerase, at 1,399,176 to 1,402,295 _1333 Position (kb) 1397 1398 1399 1400Strain fitness (log2 ratio) -2 -1 0 1at 1397.365 kb on - strand, within HP15_1331at 1397.427 kb on + strand, within HP15_1331at 1397.435 kb on - strand, within HP15_1331at 1398.061 kb on - strand, within HP15_1332at 1398.154 kb on + strand, within HP15_1332at 1398.162 kb on - strand, within HP15_1332at 1398.192 kb on - strand, within HP15_1332at 1398.213 kb on - strand, within HP15_1332at 1398.365 kb on + strand, within HP15_1332at 1398.365 kb on + strand, within HP15_1332at 1398.575 kb on - strand, within HP15_1332at 1398.659 kb on + strand, within HP15_1332at 1398.712 kb on + strand, within HP15_1332at 1398.720 kb on - strand, within HP15_1332at 1398.763 kb on - strand, within HP15_1332at 1398.772 kb on - strand, within HP15_1332at 1398.951 kb on - strand, within HP15_1332at 1399.339 kb on - strandat 1399.410 kb on + strandat 1399.549 kb on + strand, within HP15_1333at 1399.562 kb on - strand, within HP15_1333at 1399.610 kb on + strand, within HP15_1333at 1399.641 kb on + strand, within HP15_1333at 1399.658 kb on + strand, within HP15_1333at 1399.678 kb on - strand, within HP15_1333at 1399.704 kb on - strand, within HP15_1333at 1399.771 kb on - strand, within HP15_1333at 1399.829 kb on - strand, within HP15_1333at 1400.001 kb on - strand, within HP15_1333at 1400.029 kb on + strand, within HP15_1333at 1400.031 kb on + strand, within HP15_1333at 1400.037 kb on - strand, within HP15_1333

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,397,365 - HP15_1331 0.77 -1.2
1,397,427 + HP15_1331 0.80 -1.7
1,397,435 - HP15_1331 0.81 -1.0
1,398,061 - HP15_1332 0.19 -1.2
1,398,154 + HP15_1332 0.26 -0.1
1,398,162 - HP15_1332 0.27 -0.8
1,398,192 - HP15_1332 0.29 -0.3
1,398,213 - HP15_1332 0.31 -0.8
1,398,365 + HP15_1332 0.42 -0.9
1,398,365 + HP15_1332 0.42 +0.3
1,398,575 - HP15_1332 0.58 -0.6
1,398,659 + HP15_1332 0.65 -0.5
1,398,712 + HP15_1332 0.69 +0.3
1,398,720 - HP15_1332 0.69 +0.5
1,398,763 - HP15_1332 0.72 -0.3
1,398,772 - HP15_1332 0.73 +0.2
1,398,951 - HP15_1332 0.87 -0.5
1,399,339 - +0.5
1,399,410 + -1.8
1,399,549 + HP15_1333 0.12 +0.0
1,399,562 - HP15_1333 0.12 +0.4
1,399,610 + HP15_1333 0.14 -0.6
1,399,641 + HP15_1333 0.15 +0.7
1,399,658 + HP15_1333 0.15 -0.8
1,399,678 - HP15_1333 0.16 +0.0
1,399,704 - HP15_1333 0.17 -0.2
1,399,771 - HP15_1333 0.19 +0.2
1,399,829 - HP15_1333 0.21 -0.3
1,400,001 - HP15_1333 0.26 +0.1
1,400,029 + HP15_1333 0.27 -0.1
1,400,031 + HP15_1333 0.27 -0.6
1,400,037 - HP15_1333 0.28 +0.0

Or see this region's nucleotide sequence