Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1331 and HP15_1332 are separated by 25 nucleotides HP15_1332 and HP15_1333 are separated by 49 nucleotides
HP15_1331: HP15_1331 - pyruvate carboxylase subunit B, at 1,395,991 to 1,397,778
_1331
HP15_1332: HP15_1332 - sodium ion-translocating decarboxylase, beta subunit, at 1,397,804 to 1,399,126
_1332
HP15_1333: HP15_1333 - error-prone DNA polymerase, at 1,399,176 to 1,402,295
_1333
Position (kb)
1397
1398
1399
1400 Strain fitness (log2 ratio)
-2
-1
0
1 at 1397.365 kb on - strand, within HP15_1331 at 1397.427 kb on + strand, within HP15_1331 at 1397.435 kb on - strand, within HP15_1331 at 1398.061 kb on - strand, within HP15_1332 at 1398.154 kb on + strand, within HP15_1332 at 1398.162 kb on - strand, within HP15_1332 at 1398.192 kb on - strand, within HP15_1332 at 1398.213 kb on - strand, within HP15_1332 at 1398.365 kb on + strand, within HP15_1332 at 1398.365 kb on + strand, within HP15_1332 at 1398.575 kb on - strand, within HP15_1332 at 1398.659 kb on + strand, within HP15_1332 at 1398.712 kb on + strand, within HP15_1332 at 1398.720 kb on - strand, within HP15_1332 at 1398.763 kb on - strand, within HP15_1332 at 1398.772 kb on - strand, within HP15_1332 at 1398.951 kb on - strand, within HP15_1332 at 1399.339 kb on - strand at 1399.410 kb on + strand at 1399.549 kb on + strand, within HP15_1333 at 1399.562 kb on - strand, within HP15_1333 at 1399.610 kb on + strand, within HP15_1333 at 1399.641 kb on + strand, within HP15_1333 at 1399.658 kb on + strand, within HP15_1333 at 1399.678 kb on - strand, within HP15_1333 at 1399.704 kb on - strand, within HP15_1333 at 1399.771 kb on - strand, within HP15_1333 at 1399.829 kb on - strand, within HP15_1333 at 1400.001 kb on - strand, within HP15_1333 at 1400.029 kb on + strand, within HP15_1333 at 1400.031 kb on + strand, within HP15_1333 at 1400.037 kb on - strand, within HP15_1333
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,397,365 - HP15_1331 0.77 -1.2 1,397,427 + HP15_1331 0.80 -1.7 1,397,435 - HP15_1331 0.81 -1.0 1,398,061 - HP15_1332 0.19 -1.2 1,398,154 + HP15_1332 0.26 -0.1 1,398,162 - HP15_1332 0.27 -0.8 1,398,192 - HP15_1332 0.29 -0.3 1,398,213 - HP15_1332 0.31 -0.8 1,398,365 + HP15_1332 0.42 -0.9 1,398,365 + HP15_1332 0.42 +0.3 1,398,575 - HP15_1332 0.58 -0.6 1,398,659 + HP15_1332 0.65 -0.5 1,398,712 + HP15_1332 0.69 +0.3 1,398,720 - HP15_1332 0.69 +0.5 1,398,763 - HP15_1332 0.72 -0.3 1,398,772 - HP15_1332 0.73 +0.2 1,398,951 - HP15_1332 0.87 -0.5 1,399,339 - +0.5 1,399,410 + -1.8 1,399,549 + HP15_1333 0.12 +0.0 1,399,562 - HP15_1333 0.12 +0.4 1,399,610 + HP15_1333 0.14 -0.6 1,399,641 + HP15_1333 0.15 +0.7 1,399,658 + HP15_1333 0.15 -0.8 1,399,678 - HP15_1333 0.16 +0.0 1,399,704 - HP15_1333 0.17 -0.2 1,399,771 - HP15_1333 0.19 +0.2 1,399,829 - HP15_1333 0.21 -0.3 1,400,001 - HP15_1333 0.26 +0.1 1,400,029 + HP15_1333 0.27 -0.1 1,400,031 + HP15_1333 0.27 -0.6 1,400,037 - HP15_1333 0.28 +0.0
Or see this region's nucleotide sequence