Strain Fitness in Marinobacter adhaerens HP15 around HP15_1331

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1329 and HP15_1330 are separated by 223 nucleotidesHP15_1330 and HP15_1331 are separated by 41 nucleotidesHP15_1331 and HP15_1332 are separated by 25 nucleotides HP15_1329: HP15_1329 - DEAD/DEAH box helicase domain protein, at 1,394,101 to 1,395,474 _1329 HP15_1330: HP15_1330 - sodium ion-translocating decarboxylase, at 1,395,698 to 1,395,949 _1330 HP15_1331: HP15_1331 - pyruvate carboxylase subunit B, at 1,395,991 to 1,397,778 _1331 HP15_1332: HP15_1332 - sodium ion-translocating decarboxylase, beta subunit, at 1,397,804 to 1,399,126 _1332 Position (kb) 1395 1396 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2at 1395.067 kb on + strand, within HP15_1329at 1395.119 kb on - strand, within HP15_1329at 1395.121 kb on - strand, within HP15_1329at 1395.194 kb on + strand, within HP15_1329at 1395.199 kb on - strand, within HP15_1329at 1395.203 kb on - strand, within HP15_1329at 1395.331 kb on - strand, within HP15_1329at 1395.341 kb on - strandat 1395.375 kb on - strandat 1395.411 kb on + strandat 1395.438 kb on + strandat 1395.446 kb on - strandat 1395.501 kb on - strandat 1395.968 kb on + strandat 1396.439 kb on + strand, within HP15_1331at 1396.469 kb on + strand, within HP15_1331at 1397.365 kb on - strand, within HP15_1331at 1397.427 kb on + strand, within HP15_1331at 1397.435 kb on - strand, within HP15_1331at 1398.061 kb on - strand, within HP15_1332at 1398.154 kb on + strand, within HP15_1332at 1398.162 kb on - strand, within HP15_1332at 1398.192 kb on - strand, within HP15_1332at 1398.213 kb on - strand, within HP15_1332at 1398.365 kb on + strand, within HP15_1332at 1398.365 kb on + strand, within HP15_1332at 1398.575 kb on - strand, within HP15_1332at 1398.659 kb on + strand, within HP15_1332at 1398.712 kb on + strand, within HP15_1332at 1398.720 kb on - strand, within HP15_1332at 1398.763 kb on - strand, within HP15_1332at 1398.772 kb on - strand, within HP15_1332

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,395,067 + HP15_1329 0.70 +0.2
1,395,119 - HP15_1329 0.74 +0.1
1,395,121 - HP15_1329 0.74 -0.4
1,395,194 + HP15_1329 0.80 +0.9
1,395,199 - HP15_1329 0.80 +0.1
1,395,203 - HP15_1329 0.80 +2.5
1,395,331 - HP15_1329 0.90 +0.3
1,395,341 - +0.2
1,395,375 - -1.0
1,395,411 + +1.1
1,395,438 + -1.8
1,395,446 - -0.6
1,395,501 - -0.5
1,395,968 + +0.2
1,396,439 + HP15_1331 0.25 -1.0
1,396,469 + HP15_1331 0.27 -0.3
1,397,365 - HP15_1331 0.77 -1.2
1,397,427 + HP15_1331 0.80 -1.7
1,397,435 - HP15_1331 0.81 -1.0
1,398,061 - HP15_1332 0.19 -1.2
1,398,154 + HP15_1332 0.26 -0.1
1,398,162 - HP15_1332 0.27 -0.8
1,398,192 - HP15_1332 0.29 -0.3
1,398,213 - HP15_1332 0.31 -0.8
1,398,365 + HP15_1332 0.42 -0.9
1,398,365 + HP15_1332 0.42 +0.3
1,398,575 - HP15_1332 0.58 -0.6
1,398,659 + HP15_1332 0.65 -0.5
1,398,712 + HP15_1332 0.69 +0.3
1,398,720 - HP15_1332 0.69 +0.5
1,398,763 - HP15_1332 0.72 -0.3
1,398,772 - HP15_1332 0.73 +0.2

Or see this region's nucleotide sequence