Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1329 and HP15_1330 are separated by 223 nucleotides HP15_1330 and HP15_1331 are separated by 41 nucleotides HP15_1331 and HP15_1332 are separated by 25 nucleotides
HP15_1329: HP15_1329 - DEAD/DEAH box helicase domain protein, at 1,394,101 to 1,395,474
_1329
HP15_1330: HP15_1330 - sodium ion-translocating decarboxylase, at 1,395,698 to 1,395,949
_1330
HP15_1331: HP15_1331 - pyruvate carboxylase subunit B, at 1,395,991 to 1,397,778
_1331
HP15_1332: HP15_1332 - sodium ion-translocating decarboxylase, beta subunit, at 1,397,804 to 1,399,126
_1332
Position (kb)
1395
1396
1397
1398 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1395.067 kb on + strand, within HP15_1329 at 1395.119 kb on - strand, within HP15_1329 at 1395.121 kb on - strand, within HP15_1329 at 1395.194 kb on + strand, within HP15_1329 at 1395.199 kb on - strand, within HP15_1329 at 1395.203 kb on - strand, within HP15_1329 at 1395.331 kb on - strand, within HP15_1329 at 1395.341 kb on - strand at 1395.375 kb on - strand at 1395.411 kb on + strand at 1395.438 kb on + strand at 1395.446 kb on - strand at 1395.501 kb on - strand at 1395.968 kb on + strand at 1396.439 kb on + strand, within HP15_1331 at 1396.469 kb on + strand, within HP15_1331 at 1397.365 kb on - strand, within HP15_1331 at 1397.427 kb on + strand, within HP15_1331 at 1397.435 kb on - strand, within HP15_1331 at 1398.061 kb on - strand, within HP15_1332 at 1398.154 kb on + strand, within HP15_1332 at 1398.162 kb on - strand, within HP15_1332 at 1398.192 kb on - strand, within HP15_1332 at 1398.213 kb on - strand, within HP15_1332 at 1398.365 kb on + strand, within HP15_1332 at 1398.365 kb on + strand, within HP15_1332 at 1398.575 kb on - strand, within HP15_1332 at 1398.659 kb on + strand, within HP15_1332 at 1398.712 kb on + strand, within HP15_1332 at 1398.720 kb on - strand, within HP15_1332 at 1398.763 kb on - strand, within HP15_1332 at 1398.772 kb on - strand, within HP15_1332
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,395,067 + HP15_1329 0.70 +0.2 1,395,119 - HP15_1329 0.74 +0.1 1,395,121 - HP15_1329 0.74 -0.4 1,395,194 + HP15_1329 0.80 +0.9 1,395,199 - HP15_1329 0.80 +0.1 1,395,203 - HP15_1329 0.80 +2.5 1,395,331 - HP15_1329 0.90 +0.3 1,395,341 - +0.2 1,395,375 - -1.0 1,395,411 + +1.1 1,395,438 + -1.8 1,395,446 - -0.6 1,395,501 - -0.5 1,395,968 + +0.2 1,396,439 + HP15_1331 0.25 -1.0 1,396,469 + HP15_1331 0.27 -0.3 1,397,365 - HP15_1331 0.77 -1.2 1,397,427 + HP15_1331 0.80 -1.7 1,397,435 - HP15_1331 0.81 -1.0 1,398,061 - HP15_1332 0.19 -1.2 1,398,154 + HP15_1332 0.26 -0.1 1,398,162 - HP15_1332 0.27 -0.8 1,398,192 - HP15_1332 0.29 -0.3 1,398,213 - HP15_1332 0.31 -0.8 1,398,365 + HP15_1332 0.42 -0.9 1,398,365 + HP15_1332 0.42 +0.3 1,398,575 - HP15_1332 0.58 -0.6 1,398,659 + HP15_1332 0.65 -0.5 1,398,712 + HP15_1332 0.69 +0.3 1,398,720 - HP15_1332 0.69 +0.5 1,398,763 - HP15_1332 0.72 -0.3 1,398,772 - HP15_1332 0.73 +0.2
Or see this region's nucleotide sequence