Strain Fitness in Marinobacter adhaerens HP15 around HP15_1298

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1296 and HP15_1297 overlap by 4 nucleotidesHP15_1297 and HP15_1298 are separated by 72 nucleotidesHP15_1298 and HP15_1299 overlap by 4 nucleotides HP15_1296: HP15_1296 - valine-pyruvate transaminase, at 1,356,526 to 1,357,803 _1296 HP15_1297: HP15_1297 - conserved hypothetical protein, secreted, at 1,357,800 to 1,358,552 _1297 HP15_1298: HP15_1298 - phosphoribosylglycinamide formyltransferase, at 1,358,625 to 1,359,287 _1298 HP15_1299: HP15_1299 - phosphoribosylaminoimidazole synthetase, at 1,359,284 to 1,360,414 _1299 Position (kb) 1358 1359 1360Strain fitness (log2 ratio) -3 -2 -1 0 1at 1357.764 kb on + strandat 1357.764 kb on + strandat 1357.764 kb on + strandat 1357.764 kb on + strandat 1357.772 kb on - strandat 1357.772 kb on - strandat 1357.772 kb on - strandat 1357.804 kb on + strandat 1358.248 kb on + strand, within HP15_1297at 1358.256 kb on - strand, within HP15_1297at 1358.338 kb on + strand, within HP15_1297at 1358.599 kb on - strandat 1358.733 kb on - strand, within HP15_1298at 1358.902 kb on + strand, within HP15_1298at 1358.939 kb on + strand, within HP15_1298at 1359.112 kb on + strand, within HP15_1298at 1359.150 kb on + strand, within HP15_1298at 1359.278 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
1,357,764 + -0.7
1,357,764 + -1.1
1,357,764 + -0.5
1,357,764 + -0.6
1,357,772 - +0.7
1,357,772 - -0.2
1,357,772 - -1.0
1,357,804 + +0.6
1,358,248 + HP15_1297 0.59 -1.3
1,358,256 - HP15_1297 0.61 -1.3
1,358,338 + HP15_1297 0.71 -1.0
1,358,599 - -0.3
1,358,733 - HP15_1298 0.16 -1.0
1,358,902 + HP15_1298 0.42 -0.3
1,358,939 + HP15_1298 0.47 -3.1
1,359,112 + HP15_1298 0.73 -0.8
1,359,150 + HP15_1298 0.79 -1.0
1,359,278 - -2.6

Or see this region's nucleotide sequence