Strain Fitness in Marinobacter adhaerens HP15 around HP15_1295

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1293 and HP15_1294 are separated by 280 nucleotidesHP15_1294 and HP15_1295 overlap by 4 nucleotidesHP15_1295 and HP15_1296 are separated by 74 nucleotides HP15_1293: HP15_1293 - iron sulfur binding protein, at 1,353,869 to 1,355,008 _1293 HP15_1294: HP15_1294 - deoxycytidine triphosphate deaminase, at 1,355,289 to 1,355,855 _1294 HP15_1295: HP15_1295 - protein containing DUF416, at 1,355,852 to 1,356,451 _1295 HP15_1296: HP15_1296 - valine-pyruvate transaminase, at 1,356,526 to 1,357,803 _1296 Position (kb) 1355 1356 1357Strain fitness (log2 ratio) -1 0 1at 1354.886 kb on + strand, within HP15_1293at 1354.941 kb on - strandat 1354.946 kb on - strandat 1354.946 kb on - strandat 1354.967 kb on - strandat 1355.062 kb on - strandat 1355.062 kb on - strandat 1355.094 kb on - strandat 1355.115 kb on - strandat 1356.161 kb on + strand, within HP15_1295at 1356.180 kb on + strand, within HP15_1295at 1356.188 kb on - strand, within HP15_1295at 1356.427 kb on + strandat 1356.460 kb on - strandat 1356.490 kb on - strandat 1356.496 kb on + strandat 1356.501 kb on + strandat 1356.602 kb on - strandat 1356.664 kb on + strand, within HP15_1296at 1356.973 kb on + strand, within HP15_1296at 1356.978 kb on + strand, within HP15_1296at 1356.981 kb on - strand, within HP15_1296at 1356.986 kb on - strand, within HP15_1296

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,354,886 + HP15_1293 0.89 -0.7
1,354,941 - -1.0
1,354,946 - -0.4
1,354,946 - +0.3
1,354,967 - -0.6
1,355,062 - +0.2
1,355,062 - +0.5
1,355,094 - +0.1
1,355,115 - -0.3
1,356,161 + HP15_1295 0.52 +0.1
1,356,180 + HP15_1295 0.55 -0.4
1,356,188 - HP15_1295 0.56 -1.1
1,356,427 + +0.2
1,356,460 - -0.1
1,356,490 - -0.5
1,356,496 + +0.2
1,356,501 + +0.3
1,356,602 - +0.2
1,356,664 + HP15_1296 0.11 +0.7
1,356,973 + HP15_1296 0.35 -0.1
1,356,978 + HP15_1296 0.35 -0.5
1,356,981 - HP15_1296 0.36 -0.2
1,356,986 - HP15_1296 0.36 +0.7

Or see this region's nucleotide sequence