Strain Fitness in Marinobacter adhaerens HP15 around HP15_1289

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1288 and HP15_1289 are separated by 81 nucleotidesHP15_1289 and HP15_1290 are separated by 86 nucleotidesHP15_1290 and HP15_1291 are separated by 184 nucleotides HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534 _1288 HP15_1289: HP15_1289 - electron transport complex, RnfABCDGE type, C subunit, at 1,348,616 to 1,350,358 _1289 HP15_1290: HP15_1290 - electron transport complex, RnfABCDGE type, B subunit, at 1,350,445 to 1,350,867 _1290 HP15_1291: HP15_1291 - electron transport complex, RnfA, at 1,351,052 to 1,351,633 _1291 Position (kb) 1348 1349 1350 1351Strain fitness (log2 ratio) -2 -1 0 1at 1347.720 kb on + strand, within HP15_1288at 1348.020 kb on - strand, within HP15_1288at 1348.130 kb on + strand, within HP15_1288at 1348.420 kb on + strand, within HP15_1288at 1348.427 kb on - strand, within HP15_1288at 1348.446 kb on - strandat 1348.446 kb on - strandat 1348.450 kb on + strandat 1348.553 kb on + strandat 1348.673 kb on - strandat 1348.689 kb on + strandat 1348.861 kb on + strand, within HP15_1289at 1349.112 kb on + strand, within HP15_1289at 1349.141 kb on + strand, within HP15_1289at 1349.165 kb on + strand, within HP15_1289at 1349.173 kb on - strand, within HP15_1289at 1349.233 kb on - strand, within HP15_1289at 1349.312 kb on + strand, within HP15_1289at 1349.411 kb on + strand, within HP15_1289at 1349.434 kb on - strand, within HP15_1289at 1349.612 kb on - strand, within HP15_1289at 1349.717 kb on - strand, within HP15_1289at 1349.733 kb on + strand, within HP15_1289at 1349.814 kb on + strand, within HP15_1289at 1349.967 kb on + strand, within HP15_1289at 1350.116 kb on + strand, within HP15_1289at 1350.305 kb on - strandat 1350.384 kb on + strandat 1350.392 kb on - strandat 1350.528 kb on - strand, within HP15_1290at 1350.603 kb on - strand, within HP15_1290at 1350.649 kb on + strand, within HP15_1290at 1350.712 kb on - strand, within HP15_1290at 1350.924 kb on - strandat 1350.928 kb on + strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1350.936 kb on - strandat 1351.280 kb on + strand, within HP15_1291at 1351.280 kb on + strand, within HP15_1291at 1351.280 kb on + strand, within HP15_1291

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,347,720 + HP15_1288 0.18 -0.1
1,348,020 - HP15_1288 0.48 +0.3
1,348,130 + HP15_1288 0.59 -1.3
1,348,420 + HP15_1288 0.88 -1.3
1,348,427 - HP15_1288 0.89 -0.5
1,348,446 - +0.7
1,348,446 - -0.7
1,348,450 + -0.3
1,348,553 + -0.7
1,348,673 - +0.4
1,348,689 + -0.4
1,348,861 + HP15_1289 0.14 -1.1
1,349,112 + HP15_1289 0.28 -0.8
1,349,141 + HP15_1289 0.30 -0.3
1,349,165 + HP15_1289 0.31 -0.7
1,349,173 - HP15_1289 0.32 -1.8
1,349,233 - HP15_1289 0.35 -0.7
1,349,312 + HP15_1289 0.40 -1.1
1,349,411 + HP15_1289 0.46 -0.4
1,349,434 - HP15_1289 0.47 -0.3
1,349,612 - HP15_1289 0.57 -0.9
1,349,717 - HP15_1289 0.63 -0.7
1,349,733 + HP15_1289 0.64 -0.7
1,349,814 + HP15_1289 0.69 -1.4
1,349,967 + HP15_1289 0.78 -1.3
1,350,116 + HP15_1289 0.86 -0.9
1,350,305 - -1.4
1,350,384 + -1.4
1,350,392 - +0.1
1,350,528 - HP15_1290 0.20 +0.5
1,350,603 - HP15_1290 0.37 -1.8
1,350,649 + HP15_1290 0.48 -0.5
1,350,712 - HP15_1290 0.63 -1.0
1,350,924 - -0.7
1,350,928 + -0.6
1,350,936 - -1.3
1,350,936 - -1.3
1,350,936 - -1.4
1,350,936 - -0.9
1,351,280 + HP15_1291 0.39 -2.6
1,351,280 + HP15_1291 0.39 -0.5
1,351,280 + HP15_1291 0.39 -1.3

Or see this region's nucleotide sequence