Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1288 and HP15_1289 are separated by 81 nucleotides HP15_1289 and HP15_1290 are separated by 86 nucleotides HP15_1290 and HP15_1291 are separated by 184 nucleotides
HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534
_1288
HP15_1289: HP15_1289 - electron transport complex, RnfABCDGE type, C subunit, at 1,348,616 to 1,350,358
_1289
HP15_1290: HP15_1290 - electron transport complex, RnfABCDGE type, B subunit, at 1,350,445 to 1,350,867
_1290
HP15_1291: HP15_1291 - electron transport complex, RnfA, at 1,351,052 to 1,351,633
_1291
Position (kb)
1348
1349
1350
1351 Strain fitness (log2 ratio)
-2
-1
0
1 at 1347.720 kb on + strand, within HP15_1288 at 1348.020 kb on - strand, within HP15_1288 at 1348.130 kb on + strand, within HP15_1288 at 1348.420 kb on + strand, within HP15_1288 at 1348.427 kb on - strand, within HP15_1288 at 1348.446 kb on - strand at 1348.446 kb on - strand at 1348.450 kb on + strand at 1348.553 kb on + strand at 1348.673 kb on - strand at 1348.689 kb on + strand at 1348.861 kb on + strand, within HP15_1289 at 1349.112 kb on + strand, within HP15_1289 at 1349.141 kb on + strand, within HP15_1289 at 1349.165 kb on + strand, within HP15_1289 at 1349.173 kb on - strand, within HP15_1289 at 1349.233 kb on - strand, within HP15_1289 at 1349.312 kb on + strand, within HP15_1289 at 1349.411 kb on + strand, within HP15_1289 at 1349.434 kb on - strand, within HP15_1289 at 1349.612 kb on - strand, within HP15_1289 at 1349.717 kb on - strand, within HP15_1289 at 1349.733 kb on + strand, within HP15_1289 at 1349.814 kb on + strand, within HP15_1289 at 1349.967 kb on + strand, within HP15_1289 at 1350.116 kb on + strand, within HP15_1289 at 1350.305 kb on - strand at 1350.384 kb on + strand at 1350.392 kb on - strand at 1350.528 kb on - strand, within HP15_1290 at 1350.603 kb on - strand, within HP15_1290 at 1350.649 kb on + strand, within HP15_1290 at 1350.712 kb on - strand, within HP15_1290 at 1350.924 kb on - strand at 1350.928 kb on + strand at 1350.936 kb on - strand at 1350.936 kb on - strand at 1350.936 kb on - strand at 1350.936 kb on - strand at 1351.280 kb on + strand, within HP15_1291 at 1351.280 kb on + strand, within HP15_1291 at 1351.280 kb on + strand, within HP15_1291
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,347,720 + HP15_1288 0.18 -0.1 1,348,020 - HP15_1288 0.48 +0.3 1,348,130 + HP15_1288 0.59 -1.3 1,348,420 + HP15_1288 0.88 -1.3 1,348,427 - HP15_1288 0.89 -0.5 1,348,446 - +0.7 1,348,446 - -0.7 1,348,450 + -0.3 1,348,553 + -0.7 1,348,673 - +0.4 1,348,689 + -0.4 1,348,861 + HP15_1289 0.14 -1.1 1,349,112 + HP15_1289 0.28 -0.8 1,349,141 + HP15_1289 0.30 -0.3 1,349,165 + HP15_1289 0.31 -0.7 1,349,173 - HP15_1289 0.32 -1.8 1,349,233 - HP15_1289 0.35 -0.7 1,349,312 + HP15_1289 0.40 -1.1 1,349,411 + HP15_1289 0.46 -0.4 1,349,434 - HP15_1289 0.47 -0.3 1,349,612 - HP15_1289 0.57 -0.9 1,349,717 - HP15_1289 0.63 -0.7 1,349,733 + HP15_1289 0.64 -0.7 1,349,814 + HP15_1289 0.69 -1.4 1,349,967 + HP15_1289 0.78 -1.3 1,350,116 + HP15_1289 0.86 -0.9 1,350,305 - -1.4 1,350,384 + -1.4 1,350,392 - +0.1 1,350,528 - HP15_1290 0.20 +0.5 1,350,603 - HP15_1290 0.37 -1.8 1,350,649 + HP15_1290 0.48 -0.5 1,350,712 - HP15_1290 0.63 -1.0 1,350,924 - -0.7 1,350,928 + -0.6 1,350,936 - -1.3 1,350,936 - -1.3 1,350,936 - -1.4 1,350,936 - -0.9 1,351,280 + HP15_1291 0.39 -2.6 1,351,280 + HP15_1291 0.39 -0.5 1,351,280 + HP15_1291 0.39 -1.3
Or see this region's nucleotide sequence