Strain Fitness in Marinobacter adhaerens HP15 around HP15_1288

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1286 and HP15_1287 are separated by 2 nucleotidesHP15_1287 and HP15_1288 are separated by 2 nucleotidesHP15_1288 and HP15_1289 are separated by 81 nucleotides HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838 _1286 HP15_1287: HP15_1287 - electron transport complex, RnfABCDGE type, G subunit, at 1,346,841 to 1,347,542 _1287 HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534 _1288 HP15_1289: HP15_1289 - electron transport complex, RnfABCDGE type, C subunit, at 1,348,616 to 1,350,358 _1289 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -2 -1 0 1at 1346.561 kb on + strand, within HP15_1286at 1346.758 kb on + strand, within HP15_1286at 1346.862 kb on - strandat 1347.013 kb on + strand, within HP15_1287at 1347.357 kb on - strand, within HP15_1287at 1347.398 kb on + strand, within HP15_1287at 1347.406 kb on - strand, within HP15_1287at 1347.542 kb on + strandat 1347.720 kb on + strand, within HP15_1288at 1348.020 kb on - strand, within HP15_1288at 1348.130 kb on + strand, within HP15_1288at 1348.420 kb on + strand, within HP15_1288at 1348.427 kb on - strand, within HP15_1288at 1348.446 kb on - strandat 1348.446 kb on - strandat 1348.450 kb on + strandat 1348.553 kb on + strandat 1348.673 kb on - strandat 1348.689 kb on + strandat 1348.861 kb on + strand, within HP15_1289at 1349.112 kb on + strand, within HP15_1289at 1349.141 kb on + strand, within HP15_1289at 1349.165 kb on + strand, within HP15_1289at 1349.173 kb on - strand, within HP15_1289at 1349.233 kb on - strand, within HP15_1289at 1349.312 kb on + strand, within HP15_1289at 1349.411 kb on + strand, within HP15_1289at 1349.434 kb on - strand, within HP15_1289

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,346,561 + HP15_1286 0.61 +0.6
1,346,758 + HP15_1286 0.89 -1.4
1,346,862 - +0.0
1,347,013 + HP15_1287 0.25 +1.5
1,347,357 - HP15_1287 0.74 -1.0
1,347,398 + HP15_1287 0.79 -0.7
1,347,406 - HP15_1287 0.80 -0.4
1,347,542 + -0.6
1,347,720 + HP15_1288 0.18 -0.1
1,348,020 - HP15_1288 0.48 +0.3
1,348,130 + HP15_1288 0.59 -1.3
1,348,420 + HP15_1288 0.88 -1.3
1,348,427 - HP15_1288 0.89 -0.5
1,348,446 - +0.7
1,348,446 - -0.7
1,348,450 + -0.3
1,348,553 + -0.7
1,348,673 - +0.4
1,348,689 + -0.4
1,348,861 + HP15_1289 0.14 -1.1
1,349,112 + HP15_1289 0.28 -0.8
1,349,141 + HP15_1289 0.30 -0.3
1,349,165 + HP15_1289 0.31 -0.7
1,349,173 - HP15_1289 0.32 -1.8
1,349,233 - HP15_1289 0.35 -0.7
1,349,312 + HP15_1289 0.40 -1.1
1,349,411 + HP15_1289 0.46 -0.4
1,349,434 - HP15_1289 0.47 -0.3

Or see this region's nucleotide sequence