Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1286 and HP15_1287 are separated by 2 nucleotides HP15_1287 and HP15_1288 are separated by 2 nucleotides HP15_1288 and HP15_1289 are separated by 81 nucleotides
HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838
_1286
HP15_1287: HP15_1287 - electron transport complex, RnfABCDGE type, G subunit, at 1,346,841 to 1,347,542
_1287
HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534
_1288
HP15_1289: HP15_1289 - electron transport complex, RnfABCDGE type, C subunit, at 1,348,616 to 1,350,358
_1289
Position (kb)
1347
1348
1349 Strain fitness (log2 ratio)
-2
-1
0
1 at 1346.561 kb on + strand, within HP15_1286 at 1346.758 kb on + strand, within HP15_1286 at 1346.862 kb on - strand at 1347.013 kb on + strand, within HP15_1287 at 1347.357 kb on - strand, within HP15_1287 at 1347.398 kb on + strand, within HP15_1287 at 1347.406 kb on - strand, within HP15_1287 at 1347.542 kb on + strand at 1347.720 kb on + strand, within HP15_1288 at 1348.020 kb on - strand, within HP15_1288 at 1348.130 kb on + strand, within HP15_1288 at 1348.420 kb on + strand, within HP15_1288 at 1348.427 kb on - strand, within HP15_1288 at 1348.446 kb on - strand at 1348.446 kb on - strand at 1348.450 kb on + strand at 1348.553 kb on + strand at 1348.673 kb on - strand at 1348.689 kb on + strand at 1348.861 kb on + strand, within HP15_1289 at 1349.112 kb on + strand, within HP15_1289 at 1349.141 kb on + strand, within HP15_1289 at 1349.165 kb on + strand, within HP15_1289 at 1349.173 kb on - strand, within HP15_1289 at 1349.233 kb on - strand, within HP15_1289 at 1349.312 kb on + strand, within HP15_1289 at 1349.411 kb on + strand, within HP15_1289 at 1349.434 kb on - strand, within HP15_1289
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,346,561 + HP15_1286 0.61 +0.6 1,346,758 + HP15_1286 0.89 -1.4 1,346,862 - +0.0 1,347,013 + HP15_1287 0.25 +1.5 1,347,357 - HP15_1287 0.74 -1.0 1,347,398 + HP15_1287 0.79 -0.7 1,347,406 - HP15_1287 0.80 -0.4 1,347,542 + -0.6 1,347,720 + HP15_1288 0.18 -0.1 1,348,020 - HP15_1288 0.48 +0.3 1,348,130 + HP15_1288 0.59 -1.3 1,348,420 + HP15_1288 0.88 -1.3 1,348,427 - HP15_1288 0.89 -0.5 1,348,446 - +0.7 1,348,446 - -0.7 1,348,450 + -0.3 1,348,553 + -0.7 1,348,673 - +0.4 1,348,689 + -0.4 1,348,861 + HP15_1289 0.14 -1.1 1,349,112 + HP15_1289 0.28 -0.8 1,349,141 + HP15_1289 0.30 -0.3 1,349,165 + HP15_1289 0.31 -0.7 1,349,173 - HP15_1289 0.32 -1.8 1,349,233 - HP15_1289 0.35 -0.7 1,349,312 + HP15_1289 0.40 -1.1 1,349,411 + HP15_1289 0.46 -0.4 1,349,434 - HP15_1289 0.47 -0.3
Or see this region's nucleotide sequence