Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1285 and HP15_1286 are separated by 28 nucleotides HP15_1286 and HP15_1287 are separated by 2 nucleotides HP15_1287 and HP15_1288 are separated by 2 nucleotides
HP15_1285: HP15_1285 - endonuclease III, at 1,345,455 to 1,346,093
_1285
HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838
_1286
HP15_1287: HP15_1287 - electron transport complex, RnfABCDGE type, G subunit, at 1,346,841 to 1,347,542
_1287
HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534
_1288
Position (kb)
1346
1347
1348 Strain fitness (log2 ratio)
-2
-1
0
1 at 1345.853 kb on + strand, within HP15_1285 at 1345.853 kb on + strand, within HP15_1285 at 1345.895 kb on + strand, within HP15_1285 at 1345.907 kb on + strand, within HP15_1285 at 1345.947 kb on - strand, within HP15_1285 at 1345.955 kb on + strand, within HP15_1285 at 1345.990 kb on - strand, within HP15_1285 at 1346.017 kb on - strand, within HP15_1285 at 1346.059 kb on - strand at 1346.098 kb on + strand at 1346.341 kb on - strand, within HP15_1286 at 1346.403 kb on - strand, within HP15_1286 at 1346.491 kb on - strand, within HP15_1286 at 1346.561 kb on + strand, within HP15_1286 at 1346.758 kb on + strand, within HP15_1286 at 1346.862 kb on - strand at 1347.013 kb on + strand, within HP15_1287 at 1347.357 kb on - strand, within HP15_1287 at 1347.398 kb on + strand, within HP15_1287 at 1347.406 kb on - strand, within HP15_1287 at 1347.542 kb on + strand at 1347.720 kb on + strand, within HP15_1288 at 1348.020 kb on - strand, within HP15_1288 at 1348.130 kb on + strand, within HP15_1288 at 1348.420 kb on + strand, within HP15_1288 at 1348.427 kb on - strand, within HP15_1288 at 1348.446 kb on - strand at 1348.446 kb on - strand at 1348.450 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,345,853 + HP15_1285 0.62 -0.6 1,345,853 + HP15_1285 0.62 +0.7 1,345,895 + HP15_1285 0.69 +1.1 1,345,907 + HP15_1285 0.71 -0.2 1,345,947 - HP15_1285 0.77 +1.7 1,345,955 + HP15_1285 0.78 +0.0 1,345,990 - HP15_1285 0.84 -1.0 1,346,017 - HP15_1285 0.88 -0.7 1,346,059 - -0.1 1,346,098 + -2.3 1,346,341 - HP15_1286 0.31 -1.0 1,346,403 - HP15_1286 0.39 +1.7 1,346,491 - HP15_1286 0.51 -0.7 1,346,561 + HP15_1286 0.61 +0.6 1,346,758 + HP15_1286 0.89 -1.4 1,346,862 - +0.0 1,347,013 + HP15_1287 0.25 +1.5 1,347,357 - HP15_1287 0.74 -1.0 1,347,398 + HP15_1287 0.79 -0.7 1,347,406 - HP15_1287 0.80 -0.4 1,347,542 + -0.6 1,347,720 + HP15_1288 0.18 -0.1 1,348,020 - HP15_1288 0.48 +0.3 1,348,130 + HP15_1288 0.59 -1.3 1,348,420 + HP15_1288 0.88 -1.3 1,348,427 - HP15_1288 0.89 -0.5 1,348,446 - +0.7 1,348,446 - -0.7 1,348,450 + -0.3
Or see this region's nucleotide sequence