Strain Fitness in Marinobacter adhaerens HP15 around HP15_1247

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotidesHP15_rRNA9 and HP15_1247 are separated by 66 nucleotidesHP15_1247 and HP15_1248 overlap by 4 nucleotides HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951 _rRNA8 HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166 _rRNA9 HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913 _1247 HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547 _1248 Position (kb) 1304 1305Strain fitness (log2 ratio) -2 -1 0 1 2at 1304.231 kb on + strandat 1304.442 kb on + strand, within HP15_1247at 1304.519 kb on - strand, within HP15_1247at 1304.528 kb on + strand, within HP15_1247at 1304.627 kb on - strand, within HP15_1247at 1304.661 kb on + strand, within HP15_1247at 1304.828 kb on + strand, within HP15_1247at 1305.037 kb on + strandat 1305.065 kb on - strandat 1305.172 kb on - strand, within HP15_1248at 1305.283 kb on - strand, within HP15_1248at 1305.317 kb on - strand, within HP15_1248at 1305.340 kb on - strand, within HP15_1248at 1305.404 kb on - strand, within HP15_1248at 1305.435 kb on - strand, within HP15_1248at 1305.476 kb on + strand, within HP15_1248at 1305.596 kb on + strand, within HP15_1248at 1305.599 kb on - strand, within HP15_1248at 1305.692 kb on + strand, within HP15_1248at 1305.821 kb on + strand, within HP15_1248at 1305.871 kb on - strand, within HP15_1248

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,304,231 + +1.5
1,304,442 + HP15_1247 0.31 +0.3
1,304,519 - HP15_1247 0.42 +0.1
1,304,528 + HP15_1247 0.43 -1.3
1,304,627 - HP15_1247 0.58 -1.1
1,304,661 + HP15_1247 0.63 -2.6
1,304,828 + HP15_1247 0.87 +0.3
1,305,037 + +0.4
1,305,065 - -0.1
1,305,172 - HP15_1248 0.16 -0.1
1,305,283 - HP15_1248 0.23 +0.6
1,305,317 - HP15_1248 0.25 +1.9
1,305,340 - HP15_1248 0.26 +0.1
1,305,404 - HP15_1248 0.30 -0.2
1,305,435 - HP15_1248 0.32 -0.3
1,305,476 + HP15_1248 0.35 +0.0
1,305,596 + HP15_1248 0.42 +0.4
1,305,599 - HP15_1248 0.42 -0.0
1,305,692 + HP15_1248 0.48 +0.1
1,305,821 + HP15_1248 0.56 -0.7
1,305,871 - HP15_1248 0.59 +0.4

Or see this region's nucleotide sequence