Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1186 and HP15_1187 are separated by 277 nucleotides HP15_1187 and HP15_1188 overlap by 4 nucleotides HP15_1188 and HP15_1189 are separated by 21 nucleotides
HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853
_1186
HP15_1187: HP15_1187 - BolA-like protein, at 1,222,131 to 1,222,487
_1187
HP15_1188: HP15_1188 - Sua5/YciO/YrdC/YwlC family protein, at 1,222,484 to 1,223,107
_1188
HP15_1189: HP15_1189 - conserved hypothetical protein, at 1,223,129 to 1,223,794
_1189
Position (kb)
1222
1223 Strain fitness (log2 ratio)
-2
-1
0
1 at 1221.168 kb on + strand, within HP15_1186 at 1221.168 kb on + strand, within HP15_1186 at 1221.197 kb on - strand, within HP15_1186 at 1221.204 kb on + strand, within HP15_1186 at 1221.206 kb on - strand, within HP15_1186 at 1221.238 kb on + strand, within HP15_1186 at 1221.266 kb on - strand, within HP15_1186 at 1221.365 kb on + strand, within HP15_1186 at 1221.378 kb on - strand, within HP15_1186 at 1221.405 kb on + strand, within HP15_1186 at 1221.428 kb on + strand, within HP15_1186 at 1221.547 kb on + strand, within HP15_1186 at 1221.594 kb on - strand, within HP15_1186 at 1221.598 kb on + strand, within HP15_1186 at 1221.678 kb on + strand at 1221.678 kb on + strand at 1221.784 kb on + strand at 1221.789 kb on + strand at 1221.807 kb on - strand at 1221.857 kb on + strand at 1221.922 kb on - strand at 1221.933 kb on + strand at 1221.950 kb on - strand at 1222.013 kb on + strand at 1222.108 kb on - strand at 1222.113 kb on - strand at 1222.171 kb on - strand, within HP15_1187 at 1222.179 kb on - strand, within HP15_1187 at 1222.553 kb on - strand, within HP15_1188 at 1222.553 kb on - strand, within HP15_1188 at 1222.586 kb on + strand, within HP15_1188 at 1222.689 kb on + strand, within HP15_1188 at 1222.734 kb on - strand, within HP15_1188 at 1222.876 kb on - strand, within HP15_1188 at 1222.876 kb on - strand, within HP15_1188 at 1222.895 kb on - strand, within HP15_1188 at 1222.971 kb on + strand, within HP15_1188 at 1223.024 kb on - strand, within HP15_1188 at 1223.041 kb on - strand, within HP15_1188 at 1223.154 kb on - strand at 1223.216 kb on + strand, within HP15_1189 at 1223.225 kb on - strand, within HP15_1189 at 1223.275 kb on - strand, within HP15_1189 at 1223.284 kb on - strand, within HP15_1189 at 1223.306 kb on - strand, within HP15_1189 at 1223.331 kb on + strand, within HP15_1189 at 1223.350 kb on + strand, within HP15_1189
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,221,168 + HP15_1186 0.69 -0.2 1,221,168 + HP15_1186 0.69 -0.2 1,221,197 - HP15_1186 0.70 +0.5 1,221,204 + HP15_1186 0.70 -1.8 1,221,206 - HP15_1186 0.70 +1.3 1,221,238 + HP15_1186 0.72 -0.1 1,221,266 - HP15_1186 0.73 -0.0 1,221,365 + HP15_1186 0.78 +0.1 1,221,378 - HP15_1186 0.78 +0.1 1,221,405 + HP15_1186 0.79 -1.5 1,221,428 + HP15_1186 0.80 +0.1 1,221,547 + HP15_1186 0.86 +0.4 1,221,594 - HP15_1186 0.88 +0.3 1,221,598 + HP15_1186 0.88 +0.6 1,221,678 + +0.3 1,221,678 + +0.3 1,221,784 + +0.5 1,221,789 + +0.1 1,221,807 - +0.2 1,221,857 + -0.0 1,221,922 - -0.2 1,221,933 + -0.1 1,221,950 - -0.2 1,222,013 + +0.1 1,222,108 - +1.0 1,222,113 - +0.3 1,222,171 - HP15_1187 0.11 -0.1 1,222,179 - HP15_1187 0.13 -0.8 1,222,553 - HP15_1188 0.11 -0.6 1,222,553 - HP15_1188 0.11 -0.4 1,222,586 + HP15_1188 0.16 -0.2 1,222,689 + HP15_1188 0.33 +0.2 1,222,734 - HP15_1188 0.40 +0.4 1,222,876 - HP15_1188 0.63 -0.1 1,222,876 - HP15_1188 0.63 +0.4 1,222,895 - HP15_1188 0.66 -0.0 1,222,971 + HP15_1188 0.78 -0.9 1,223,024 - HP15_1188 0.87 +0.3 1,223,041 - HP15_1188 0.89 +0.0 1,223,154 - -0.2 1,223,216 + HP15_1189 0.13 -0.1 1,223,225 - HP15_1189 0.14 +0.1 1,223,275 - HP15_1189 0.22 +1.4 1,223,284 - HP15_1189 0.23 +1.5 1,223,306 - HP15_1189 0.27 +0.8 1,223,331 + HP15_1189 0.30 -0.9 1,223,350 + HP15_1189 0.33 +0.0
Or see this region's nucleotide sequence