Strain Fitness in Marinobacter adhaerens HP15 around HP15_1187

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1186 and HP15_1187 are separated by 277 nucleotidesHP15_1187 and HP15_1188 overlap by 4 nucleotidesHP15_1188 and HP15_1189 are separated by 21 nucleotides HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853 _1186 HP15_1187: HP15_1187 - BolA-like protein, at 1,222,131 to 1,222,487 _1187 HP15_1188: HP15_1188 - Sua5/YciO/YrdC/YwlC family protein, at 1,222,484 to 1,223,107 _1188 HP15_1189: HP15_1189 - conserved hypothetical protein, at 1,223,129 to 1,223,794 _1189 Position (kb) 1222 1223Strain fitness (log2 ratio) -2 -1 0 1at 1221.168 kb on + strand, within HP15_1186at 1221.168 kb on + strand, within HP15_1186at 1221.197 kb on - strand, within HP15_1186at 1221.204 kb on + strand, within HP15_1186at 1221.206 kb on - strand, within HP15_1186at 1221.238 kb on + strand, within HP15_1186at 1221.266 kb on - strand, within HP15_1186at 1221.365 kb on + strand, within HP15_1186at 1221.378 kb on - strand, within HP15_1186at 1221.405 kb on + strand, within HP15_1186at 1221.428 kb on + strand, within HP15_1186at 1221.547 kb on + strand, within HP15_1186at 1221.594 kb on - strand, within HP15_1186at 1221.598 kb on + strand, within HP15_1186at 1221.678 kb on + strandat 1221.678 kb on + strandat 1221.784 kb on + strandat 1221.789 kb on + strandat 1221.807 kb on - strandat 1221.857 kb on + strandat 1221.922 kb on - strandat 1221.933 kb on + strandat 1221.950 kb on - strandat 1222.013 kb on + strandat 1222.108 kb on - strandat 1222.113 kb on - strandat 1222.171 kb on - strand, within HP15_1187at 1222.179 kb on - strand, within HP15_1187at 1222.553 kb on - strand, within HP15_1188at 1222.553 kb on - strand, within HP15_1188at 1222.586 kb on + strand, within HP15_1188at 1222.689 kb on + strand, within HP15_1188at 1222.734 kb on - strand, within HP15_1188at 1222.876 kb on - strand, within HP15_1188at 1222.876 kb on - strand, within HP15_1188at 1222.895 kb on - strand, within HP15_1188at 1222.971 kb on + strand, within HP15_1188at 1223.024 kb on - strand, within HP15_1188at 1223.041 kb on - strand, within HP15_1188at 1223.154 kb on - strandat 1223.216 kb on + strand, within HP15_1189at 1223.225 kb on - strand, within HP15_1189at 1223.275 kb on - strand, within HP15_1189at 1223.284 kb on - strand, within HP15_1189at 1223.306 kb on - strand, within HP15_1189at 1223.331 kb on + strand, within HP15_1189at 1223.350 kb on + strand, within HP15_1189

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,221,168 + HP15_1186 0.69 -0.2
1,221,168 + HP15_1186 0.69 -0.2
1,221,197 - HP15_1186 0.70 +0.5
1,221,204 + HP15_1186 0.70 -1.8
1,221,206 - HP15_1186 0.70 +1.3
1,221,238 + HP15_1186 0.72 -0.1
1,221,266 - HP15_1186 0.73 -0.0
1,221,365 + HP15_1186 0.78 +0.1
1,221,378 - HP15_1186 0.78 +0.1
1,221,405 + HP15_1186 0.79 -1.5
1,221,428 + HP15_1186 0.80 +0.1
1,221,547 + HP15_1186 0.86 +0.4
1,221,594 - HP15_1186 0.88 +0.3
1,221,598 + HP15_1186 0.88 +0.6
1,221,678 + +0.3
1,221,678 + +0.3
1,221,784 + +0.5
1,221,789 + +0.1
1,221,807 - +0.2
1,221,857 + -0.0
1,221,922 - -0.2
1,221,933 + -0.1
1,221,950 - -0.2
1,222,013 + +0.1
1,222,108 - +1.0
1,222,113 - +0.3
1,222,171 - HP15_1187 0.11 -0.1
1,222,179 - HP15_1187 0.13 -0.8
1,222,553 - HP15_1188 0.11 -0.6
1,222,553 - HP15_1188 0.11 -0.4
1,222,586 + HP15_1188 0.16 -0.2
1,222,689 + HP15_1188 0.33 +0.2
1,222,734 - HP15_1188 0.40 +0.4
1,222,876 - HP15_1188 0.63 -0.1
1,222,876 - HP15_1188 0.63 +0.4
1,222,895 - HP15_1188 0.66 -0.0
1,222,971 + HP15_1188 0.78 -0.9
1,223,024 - HP15_1188 0.87 +0.3
1,223,041 - HP15_1188 0.89 +0.0
1,223,154 - -0.2
1,223,216 + HP15_1189 0.13 -0.1
1,223,225 - HP15_1189 0.14 +0.1
1,223,275 - HP15_1189 0.22 +1.4
1,223,284 - HP15_1189 0.23 +1.5
1,223,306 - HP15_1189 0.27 +0.8
1,223,331 + HP15_1189 0.30 -0.9
1,223,350 + HP15_1189 0.33 +0.0

Or see this region's nucleotide sequence