Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1068 and HP15_1069 are separated by 184 nucleotides HP15_1069 and HP15_1070 are separated by 81 nucleotides
HP15_1068: HP15_1068 - transporter, at 1,094,287 to 1,096,671
_1068
HP15_1069: HP15_1069 - TRAP transporter solute receptor, TAXI family protein, at 1,096,856 to 1,097,839
_1069
HP15_1070: HP15_1070 - TRAP-type uncharacterized transport system, fused permease component, at 1,097,921 to 1,100,524
_1070
Position (kb)
1096
1097
1098 Strain fitness (log2 ratio)
-1
0
1 at 1095.934 kb on - strand, within HP15_1068 at 1095.978 kb on + strand, within HP15_1068 at 1095.978 kb on + strand, within HP15_1068 at 1095.978 kb on + strand, within HP15_1068 at 1096.001 kb on + strand, within HP15_1068 at 1096.032 kb on + strand, within HP15_1068 at 1096.098 kb on + strand, within HP15_1068 at 1096.129 kb on + strand, within HP15_1068 at 1096.129 kb on + strand, within HP15_1068 at 1096.206 kb on - strand, within HP15_1068 at 1096.251 kb on - strand, within HP15_1068 at 1096.251 kb on - strand, within HP15_1068 at 1096.270 kb on - strand, within HP15_1068 at 1096.282 kb on - strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.450 kb on - strand at 1096.495 kb on + strand at 1096.935 kb on + strand at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.178 kb on - strand, within HP15_1069 at 1097.205 kb on - strand, within HP15_1069 at 1097.228 kb on - strand, within HP15_1069 at 1097.243 kb on - strand, within HP15_1069 at 1097.371 kb on - strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.418 kb on - strand, within HP15_1069 at 1097.434 kb on + strand, within HP15_1069 at 1097.442 kb on - strand, within HP15_1069 at 1097.502 kb on + strand at 1097.543 kb on - strand, within HP15_1069 at 1097.660 kb on - strand, within HP15_1069 at 1097.787 kb on - strand at 1097.794 kb on - strand at 1097.865 kb on + strand at 1097.946 kb on - strand at 1098.258 kb on + strand, within HP15_1070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,095,934 - HP15_1068 0.69 +0.2 1,095,978 + HP15_1068 0.71 +0.1 1,095,978 + HP15_1068 0.71 -0.1 1,095,978 + HP15_1068 0.71 +0.1 1,096,001 + HP15_1068 0.72 -0.1 1,096,032 + HP15_1068 0.73 +0.3 1,096,098 + HP15_1068 0.76 +0.9 1,096,129 + HP15_1068 0.77 +0.0 1,096,129 + HP15_1068 0.77 -0.3 1,096,206 - HP15_1068 0.80 -1.3 1,096,251 - HP15_1068 0.82 +0.1 1,096,251 - HP15_1068 0.82 +0.2 1,096,270 - HP15_1068 0.83 +0.3 1,096,282 - HP15_1068 0.84 +0.3 1,096,316 + HP15_1068 0.85 -0.1 1,096,316 + HP15_1068 0.85 -0.6 1,096,316 + HP15_1068 0.85 +0.1 1,096,316 + HP15_1068 0.85 -0.2 1,096,450 - +1.1 1,096,495 + +0.6 1,096,935 + -0.4 1,097,170 + HP15_1069 0.32 -0.5 1,097,170 + HP15_1069 0.32 +0.7 1,097,170 + HP15_1069 0.32 +0.6 1,097,178 - HP15_1069 0.33 -0.0 1,097,205 - HP15_1069 0.35 -1.3 1,097,228 - HP15_1069 0.38 -0.8 1,097,243 - HP15_1069 0.39 -0.8 1,097,371 - HP15_1069 0.52 -1.4 1,097,410 + HP15_1069 0.56 +0.2 1,097,410 + HP15_1069 0.56 -0.4 1,097,410 + HP15_1069 0.56 -0.3 1,097,418 - HP15_1069 0.57 -0.2 1,097,434 + HP15_1069 0.59 -0.3 1,097,442 - HP15_1069 0.60 -1.0 1,097,502 + -0.3 1,097,543 - HP15_1069 0.70 -1.5 1,097,660 - HP15_1069 0.82 -0.5 1,097,787 - -0.3 1,097,794 - +0.1 1,097,865 + +0.1 1,097,946 - +0.7 1,098,258 + HP15_1070 0.13 +0.2
Or see this region's nucleotide sequence