Strain Fitness in Marinobacter adhaerens HP15 around HP15_1055

Experiment: L-Proline (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1054 and HP15_1055 overlap by 4 nucleotidesHP15_1055 and HP15_1056 are separated by 195 nucleotides HP15_1054: HP15_1054 - multi-sensor signal transduction histidine kinase, at 1,075,525 to 1,077,102 _1054 HP15_1055: HP15_1055 - MaoC domain protein, at 1,077,099 to 1,077,925 _1055 HP15_1056: HP15_1056 - transcriptional regulator, AraC family protein, at 1,078,121 to 1,079,290 _1056 Position (kb) 1077 1078Strain fitness (log2 ratio) -2 -1 0 1at 1076.204 kb on + strand, within HP15_1054at 1076.503 kb on - strand, within HP15_1054at 1077.043 kb on + strandat 1077.105 kb on - strandat 1077.152 kb on + strandat 1077.165 kb on - strandat 1077.364 kb on - strand, within HP15_1055at 1077.371 kb on - strand, within HP15_1055at 1077.661 kb on + strand, within HP15_1055at 1077.713 kb on - strand, within HP15_1055at 1077.795 kb on + strand, within HP15_1055at 1077.821 kb on - strand, within HP15_1055at 1077.984 kb on - strandat 1078.085 kb on - strandat 1078.087 kb on + strandat 1078.153 kb on + strandat 1078.153 kb on + strandat 1078.153 kb on + strandat 1078.161 kb on - strandat 1078.161 kb on - strandat 1078.404 kb on + strand, within HP15_1056at 1078.417 kb on - strand, within HP15_1056at 1078.527 kb on + strand, within HP15_1056at 1078.527 kb on + strand, within HP15_1056at 1078.626 kb on + strand, within HP15_1056at 1078.639 kb on - strand, within HP15_1056at 1078.683 kb on + strand, within HP15_1056at 1078.804 kb on - strand, within HP15_1056at 1078.804 kb on - strand, within HP15_1056at 1078.804 kb on - strand, within HP15_1056at 1078.804 kb on - strand, within HP15_1056

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
remove
1,076,204 + HP15_1054 0.43 -2.3
1,076,503 - HP15_1054 0.62 -0.6
1,077,043 + -1.2
1,077,105 - -0.0
1,077,152 + -0.5
1,077,165 - +1.3
1,077,364 - HP15_1055 0.32 -0.4
1,077,371 - HP15_1055 0.33 -0.8
1,077,661 + HP15_1055 0.68 -1.4
1,077,713 - HP15_1055 0.74 +0.3
1,077,795 + HP15_1055 0.84 -1.1
1,077,821 - HP15_1055 0.87 -0.5
1,077,984 - +0.1
1,078,085 - +0.9
1,078,087 + -0.7
1,078,153 + -0.7
1,078,153 + -1.9
1,078,153 + +0.2
1,078,161 - -0.8
1,078,161 - -0.3
1,078,404 + HP15_1056 0.24 -1.3
1,078,417 - HP15_1056 0.25 +0.5
1,078,527 + HP15_1056 0.35 -0.1
1,078,527 + HP15_1056 0.35 +0.3
1,078,626 + HP15_1056 0.43 +0.8
1,078,639 - HP15_1056 0.44 +0.1
1,078,683 + HP15_1056 0.48 +1.2
1,078,804 - HP15_1056 0.58 +0.1
1,078,804 - HP15_1056 0.58 +0.6
1,078,804 - HP15_1056 0.58 -0.1
1,078,804 - HP15_1056 0.58 -0.1

Or see this region's nucleotide sequence