Strain Fitness in Marinobacter adhaerens HP15 around HP15_1048

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1047 and HP15_1046 are separated by 81 nucleotidesHP15_1046 and HP15_1048 are separated by 164 nucleotidesHP15_1048 and HP15_1049 overlap by 4 nucleotidesHP15_1049 and HP15_1050 are separated by 240 nucleotidesHP15_1050 and HP15_1051 are separated by 15 nucleotides HP15_1047: HP15_1047 - DNA mismatch repair protein MutS, at 1,066,404 to 1,069,034 _1047 HP15_1046: HP15_1046 - competence damage-inducible protein A, at 1,069,116 to 1,069,616 _1046 HP15_1048: HP15_1048 - recombinase A, at 1,069,781 to 1,070,827 _1048 HP15_1049: HP15_1049 - hypothetical protein, at 1,070,824 to 1,071,084 _1049 HP15_1050: HP15_1050 - conserved hypothetical protein, at 1,071,325 to 1,071,795 _1050 HP15_1051: HP15_1051 - conserved hypothetical protein, at 1,071,811 to 1,072,188 _1051 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -2 -1 0 1 2at 1068.793 kb on + strandat 1068.877 kb on - strandat 1068.877 kb on - strandat 1068.897 kb on + strandat 1068.907 kb on + strandat 1068.915 kb on - strandat 1069.038 kb on - strandat 1069.118 kb on + strandat 1069.394 kb on + strand, within HP15_1046at 1069.432 kb on - strand, within HP15_1046at 1069.488 kb on + strand, within HP15_1046at 1070.115 kb on + strand, within HP15_1048at 1070.691 kb on - strand, within HP15_1048at 1070.761 kb on + strandat 1070.766 kb on + strandat 1070.797 kb on - strandat 1070.821 kb on + strandat 1070.829 kb on - strandat 1070.872 kb on - strand, within HP15_1049at 1071.025 kb on + strand, within HP15_1049at 1071.036 kb on - strand, within HP15_1049at 1071.039 kb on + strand, within HP15_1049at 1071.200 kb on + strandat 1071.203 kb on - strandat 1071.216 kb on - strandat 1071.241 kb on - strandat 1071.245 kb on + strandat 1071.253 kb on - strandat 1071.299 kb on - strandat 1071.356 kb on + strandat 1071.364 kb on - strandat 1071.413 kb on + strand, within HP15_1050at 1071.431 kb on - strand, within HP15_1050at 1071.439 kb on - strand, within HP15_1050at 1071.478 kb on + strand, within HP15_1050at 1071.478 kb on + strand, within HP15_1050at 1071.486 kb on - strand, within HP15_1050at 1071.571 kb on - strand, within HP15_1050at 1071.631 kb on - strand, within HP15_1050at 1071.764 kb on - strandat 1071.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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1,068,793 + -0.1
1,068,877 - +0.2
1,068,877 - +0.2
1,068,897 + +0.1
1,068,907 + -0.0
1,068,915 - -0.0
1,069,038 - -0.0
1,069,118 + -0.7
1,069,394 + HP15_1046 0.55 -0.0
1,069,432 - HP15_1046 0.63 -0.3
1,069,488 + HP15_1046 0.74 -0.3
1,070,115 + HP15_1048 0.32 -1.3
1,070,691 - HP15_1048 0.87 +0.0
1,070,761 + +0.3
1,070,766 + -2.1
1,070,797 - +0.1
1,070,821 + +0.7
1,070,829 - +0.7
1,070,872 - HP15_1049 0.18 +0.2
1,071,025 + HP15_1049 0.77 -0.4
1,071,036 - HP15_1049 0.81 -0.2
1,071,039 + HP15_1049 0.82 +1.0
1,071,200 + +0.3
1,071,203 - +0.5
1,071,216 - +0.2
1,071,241 - +0.3
1,071,245 + +0.3
1,071,253 - -0.3
1,071,299 - -0.1
1,071,356 + +2.0
1,071,364 - +0.3
1,071,413 + HP15_1050 0.19 +0.1
1,071,431 - HP15_1050 0.23 +0.2
1,071,439 - HP15_1050 0.24 -0.2
1,071,478 + HP15_1050 0.32 -1.2
1,071,478 + HP15_1050 0.32 -0.2
1,071,486 - HP15_1050 0.34 +0.1
1,071,571 - HP15_1050 0.52 -0.3
1,071,631 - HP15_1050 0.65 -0.4
1,071,764 - +1.0
1,071,803 + +0.7

Or see this region's nucleotide sequence