Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22665 and BWI76_RS22670 overlap by 4 nucleotides BWI76_RS22670 and BWI76_RS22675 overlap by 1 nucleotides BWI76_RS22675 and BWI76_RS22680 are separated by 19 nucleotides BWI76_RS22680 and BWI76_RS22685 are separated by 139 nucleotides BWI76_RS22685 and BWI76_RS22690 are separated by 53 nucleotides
BWI76_RS22665: BWI76_RS22665 - tRNA pseudouridine(13) synthase TruD, at 4,723,857 to 4,724,906
_RS22665
BWI76_RS22670: BWI76_RS22670 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 4,724,903 to 4,725,382
_RS22670
BWI76_RS22675: BWI76_RS22675 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 4,725,382 to 4,726,092
_RS22675
BWI76_RS22680: BWI76_RS22680 - cell division protein FtsB, at 4,726,112 to 4,726,429
_RS22680
BWI76_RS22685: BWI76_RS22685 - hypothetical protein, at 4,726,569 to 4,726,895
_RS22685
BWI76_RS22690: BWI76_RS22690 - adenylyl-sulfate kinase, at 4,726,949 to 4,727,554
_RS22690
Position (kb) 4725
4726
4727 Strain fitness (log2 ratio) -1
0
1
2 at 4724.504 kb on + strand, within BWI76_RS22665 at 4724.504 kb on + strand, within BWI76_RS22665 at 4724.512 kb on - strand, within BWI76_RS22665 at 4724.614 kb on - strand, within BWI76_RS22665 at 4724.841 kb on + strand at 4726.585 kb on + strand at 4726.723 kb on + strand, within BWI76_RS22685 at 4726.723 kb on + strand, within BWI76_RS22685 at 4726.730 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.731 kb on - strand, within BWI76_RS22685 at 4726.753 kb on + strand, within BWI76_RS22685 at 4726.776 kb on - strand, within BWI76_RS22685 at 4726.817 kb on + strand, within BWI76_RS22685 at 4726.909 kb on + strand at 4726.964 kb on - strand at 4726.980 kb on - strand at 4726.980 kb on - strand at 4727.091 kb on + strand, within BWI76_RS22690
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 4,724,504 + BWI76_RS22665 0.62 -0.5 4,724,504 + BWI76_RS22665 0.62 -0.2 4,724,512 - BWI76_RS22665 0.62 +0.1 4,724,614 - BWI76_RS22665 0.72 -0.3 4,724,841 + +0.2 4,726,585 + +0.6 4,726,723 + BWI76_RS22685 0.47 +0.3 4,726,723 + BWI76_RS22685 0.47 +0.7 4,726,730 - BWI76_RS22685 0.49 +0.3 4,726,731 - BWI76_RS22685 0.50 +0.4 4,726,731 - BWI76_RS22685 0.50 +2.7 4,726,731 - BWI76_RS22685 0.50 +1.5 4,726,731 - BWI76_RS22685 0.50 +2.4 4,726,753 + BWI76_RS22685 0.56 +0.4 4,726,776 - BWI76_RS22685 0.63 +0.9 4,726,817 + BWI76_RS22685 0.76 +0.1 4,726,909 + +0.8 4,726,964 - +0.4 4,726,980 - +0.6 4,726,980 - +0.4 4,727,091 + BWI76_RS22690 0.23 -1.2
Or see this region's nucleotide sequence