Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30525

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30520 and BPHYT_RS30525 are separated by 234 nucleotidesBPHYT_RS30525 and BPHYT_RS30530 are separated by 272 nucleotides BPHYT_RS30520: BPHYT_RS30520 - ABC transporter substrate-binding protein, at 2,407,320 to 2,408,366 _RS30520 BPHYT_RS30525: BPHYT_RS30525 - nitrate ABC transporter substrate-binding protein, at 2,408,601 to 2,409,596 _RS30525 BPHYT_RS30530: BPHYT_RS30530 - ABC transporter substrate-binding protein, at 2,409,869 to 2,410,882 _RS30530 Position (kb) 2408 2409 2410Strain fitness (log2 ratio) -1 0 1at 2407.975 kb on + strand, within BPHYT_RS30520at 2408.443 kb on + strandat 2408.444 kb on - strandat 2408.445 kb on + strandat 2408.445 kb on + strandat 2408.504 kb on + strandat 2409.861 kb on + strandat 2410.282 kb on + strand, within BPHYT_RS30530at 2410.341 kb on - strand, within BPHYT_RS30530at 2410.341 kb on - strand, within BPHYT_RS30530at 2410.472 kb on + strand, within BPHYT_RS30530at 2410.472 kb on + strand, within BPHYT_RS30530

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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2,407,975 + BPHYT_RS30520 0.63 +0.4
2,408,443 + -1.6
2,408,444 - +0.5
2,408,445 + +0.1
2,408,445 + +1.1
2,408,504 + +0.4
2,409,861 + -0.1
2,410,282 + BPHYT_RS30530 0.41 -0.4
2,410,341 - BPHYT_RS30530 0.47 +0.5
2,410,341 - BPHYT_RS30530 0.47 +0.6
2,410,472 + BPHYT_RS30530 0.59 +1.7
2,410,472 + BPHYT_RS30530 0.59 +0.4

Or see this region's nucleotide sequence