Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20820

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20815 and BPHYT_RS20820 are separated by 7 nucleotidesBPHYT_RS20820 and BPHYT_RS20825 are separated by 53 nucleotidesBPHYT_RS20825 and BPHYT_RS20830 are separated by 14 nucleotides BPHYT_RS20815: BPHYT_RS20815 - ABC transporter ATP-binding protein, at 232,568 to 234,067 _RS20815 BPHYT_RS20820: BPHYT_RS20820 - ABC transporter permease, at 234,075 to 235,034 _RS20820 BPHYT_RS20825: BPHYT_RS20825 - electron transfer flavoprotein subunit beta, at 235,088 to 235,837 _RS20825 BPHYT_RS20830: BPHYT_RS20830 - electron transfer flavoprotein subunit beta, at 235,852 to 236,784 _RS20830 Position (kb) 234 235 236Strain fitness (log2 ratio) -1 0 1at 233.207 kb on + strand, within BPHYT_RS20815at 233.309 kb on + strand, within BPHYT_RS20815at 233.882 kb on + strand, within BPHYT_RS20815at 233.882 kb on + strand, within BPHYT_RS20815at 233.882 kb on + strand, within BPHYT_RS20815at 233.883 kb on - strand, within BPHYT_RS20815at 233.883 kb on - strand, within BPHYT_RS20815

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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233,207 + BPHYT_RS20815 0.43 +0.1
233,309 + BPHYT_RS20815 0.49 +0.1
233,882 + BPHYT_RS20815 0.88 +0.5
233,882 + BPHYT_RS20815 0.88 -0.6
233,882 + BPHYT_RS20815 0.88 -0.4
233,883 - BPHYT_RS20815 0.88 +0.2
233,883 - BPHYT_RS20815 0.88 +0.4

Or see this region's nucleotide sequence