Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20700

Experiment: D-Glucose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20695 and BPHYT_RS20700 are separated by 122 nucleotidesBPHYT_RS20700 and BPHYT_RS20705 are separated by 471 nucleotides BPHYT_RS20695: BPHYT_RS20695 - ribokinase, at 203,468 to 204,400 _RS20695 BPHYT_RS20700: BPHYT_RS20700 - nucleoside hydrolase, at 204,523 to 205,626 _RS20700 BPHYT_RS20705: BPHYT_RS20705 - Chase2 sensor protein, at 206,098 to 207,810 _RS20705 Position (kb) 204 205 206Strain fitness (log2 ratio) -1 0 1at 204.167 kb on + strand, within BPHYT_RS20695at 204.167 kb on + strand, within BPHYT_RS20695at 205.263 kb on + strand, within BPHYT_RS20700at 206.343 kb on + strand, within BPHYT_RS20705

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 20 mM (C)
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204,167 + BPHYT_RS20695 0.75 +1.0
204,167 + BPHYT_RS20695 0.75 +0.6
205,263 + BPHYT_RS20700 0.67 -0.8
206,343 + BPHYT_RS20705 0.14 -0.8

Or see this region's nucleotide sequence