Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DORF26446 and DVU0234 are separated by 787 nucleotides DVU0234 and DVU0235 are separated by 2 nucleotides DVU0235 and DORF26459 are separated by 97 nucleotides DORF26459 and DVU0236 overlap by 4 nucleotides
DORF26446: DORF26446 - no description, at 266,955 to 267,194
DORF26446
DVU0234: DVU0234 - hypothetical protein (TIGR), at 267,982 to 268,305
DVU0234
DVU0235: DVU0235 - hypothetical protein (TIGR), at 268,308 to 268,871
DVU0235
DORF26459: DORF26459 - no description, at 268,969 to 269,286
DORF26459
DVU0236: DVU0236 - site-specific recombinase, phage integrase family (TIGR), at 269,283 to 270,425
DVU0236
Position (kb) 267
268
269 Strain fitness (log2 ratio) -2
-1
0
1 at 267.059 kb on + strand, within DORF26446 at 267.211 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.281 kb on + strand at 267.489 kb on + strand at 267.491 kb on + strand at 267.508 kb on - strand at 267.615 kb on + strand at 267.674 kb on - strand at 267.681 kb on + strand at 267.728 kb on - strand at 267.743 kb on - strand at 267.769 kb on - strand at 267.779 kb on - strand at 267.812 kb on - strand at 267.839 kb on - strand at 267.902 kb on - strand at 267.935 kb on + strand at 267.981 kb on - strand at 268.025 kb on - strand, within DVU0234 at 268.025 kb on - strand, within DVU0234 at 268.027 kb on + strand, within DVU0234 at 268.051 kb on + strand, within DVU0234 at 268.059 kb on - strand, within DVU0234 at 268.059 kb on - strand, within DVU0234 at 268.083 kb on + strand, within DVU0234 at 268.178 kb on - strand, within DVU0234 at 268.207 kb on - strand, within DVU0234 at 268.215 kb on + strand, within DVU0234 at 268.220 kb on + strand, within DVU0234 at 268.223 kb on - strand, within DVU0234 at 268.317 kb on - strand at 268.378 kb on - strand, within DVU0235 at 268.397 kb on - strand, within DVU0235 at 268.407 kb on - strand, within DVU0235 at 268.422 kb on + strand, within DVU0235 at 268.478 kb on + strand, within DVU0235 at 268.486 kb on - strand, within DVU0235 at 268.486 kb on - strand, within DVU0235 at 268.556 kb on - strand, within DVU0235 at 268.654 kb on - strand, within DVU0235 at 268.661 kb on + strand, within DVU0235 at 268.699 kb on + strand, within DVU0235 at 268.701 kb on + strand, within DVU0235 at 268.701 kb on + strand, within DVU0235 at 268.709 kb on - strand, within DVU0235 at 268.709 kb on - strand, within DVU0235 at 268.709 kb on - strand, within DVU0235 at 268.714 kb on - strand, within DVU0235 at 268.762 kb on + strand, within DVU0235 at 268.779 kb on + strand, within DVU0235 at 268.779 kb on + strand, within DVU0235 at 268.779 kb on + strand, within DVU0235 at 268.787 kb on - strand, within DVU0235 at 268.787 kb on - strand, within DVU0235 at 268.793 kb on + strand, within DVU0235 at 268.803 kb on + strand, within DVU0235 at 268.822 kb on - strand at 268.872 kb on + strand at 268.898 kb on + strand at 268.930 kb on + strand at 268.948 kb on + strand at 268.948 kb on + strand at 268.956 kb on - strand at 268.956 kb on - strand at 268.976 kb on + strand at 269.060 kb on - strand, within DORF26459 at 269.074 kb on + strand, within DORF26459 at 269.074 kb on + strand, within DORF26459 at 269.093 kb on + strand, within DORF26459 at 269.147 kb on + strand, within DORF26459 at 269.155 kb on - strand, within DORF26459 at 269.189 kb on - strand, within DORF26459 at 269.194 kb on - strand, within DORF26459 at 269.260 kb on - strand at 269.304 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 267,059 + DORF26446 0.43 +0.3 267,211 + -1.7 267,221 + -0.3 267,221 + -0.3 267,221 + +0.7 267,221 + -0.4 267,221 + +0.3 267,229 - -1.6 267,229 - -0.1 267,229 - +0.4 267,281 + +0.4 267,489 + +0.2 267,491 + -0.9 267,508 - +0.0 267,615 + +1.0 267,674 - +0.5 267,681 + +0.0 267,728 - -0.5 267,743 - -0.0 267,769 - -0.4 267,779 - +0.3 267,812 - +0.4 267,839 - -0.2 267,902 - -0.1 267,935 + -0.2 267,981 - +0.7 268,025 - DVU0234 0.13 -0.9 268,025 - DVU0234 0.13 -0.9 268,027 + DVU0234 0.14 -0.2 268,051 + DVU0234 0.21 -0.0 268,059 - DVU0234 0.24 -0.5 268,059 - DVU0234 0.24 -0.3 268,083 + DVU0234 0.31 -1.8 268,178 - DVU0234 0.60 -0.2 268,207 - DVU0234 0.69 +0.1 268,215 + DVU0234 0.72 -0.5 268,220 + DVU0234 0.73 -0.2 268,223 - DVU0234 0.74 -1.2 268,317 - -0.1 268,378 - DVU0235 0.12 -0.0 268,397 - DVU0235 0.16 -0.1 268,407 - DVU0235 0.18 -0.2 268,422 + DVU0235 0.20 +0.4 268,478 + DVU0235 0.30 +0.1 268,486 - DVU0235 0.32 -0.1 268,486 - DVU0235 0.32 -0.3 268,556 - DVU0235 0.44 +1.3 268,654 - DVU0235 0.61 -1.9 268,661 + DVU0235 0.63 +0.3 268,699 + DVU0235 0.69 +0.4 268,701 + DVU0235 0.70 +0.1 268,701 + DVU0235 0.70 -1.1 268,709 - DVU0235 0.71 +0.2 268,709 - DVU0235 0.71 +0.4 268,709 - DVU0235 0.71 -1.0 268,714 - DVU0235 0.72 -1.0 268,762 + DVU0235 0.80 +0.2 268,779 + DVU0235 0.84 -0.8 268,779 + DVU0235 0.84 +0.1 268,779 + DVU0235 0.84 -0.8 268,787 - DVU0235 0.85 +0.4 268,787 - DVU0235 0.85 -0.7 268,793 + DVU0235 0.86 -0.6 268,803 + DVU0235 0.88 -0.1 268,822 - -0.5 268,872 + +0.5 268,898 + -0.6 268,930 + +0.8 268,948 + -0.0 268,948 + -0.4 268,956 - +0.0 268,956 - +0.0 268,976 + +0.8 269,060 - DORF26459 0.29 +1.0 269,074 + DORF26459 0.33 -0.2 269,074 + DORF26459 0.33 -0.1 269,093 + DORF26459 0.39 -0.9 269,147 + DORF26459 0.56 +1.6 269,155 - DORF26459 0.58 +0.4 269,189 - DORF26459 0.69 +0.8 269,194 - DORF26459 0.71 -0.8 269,260 - +1.4 269,304 - +0.1
Or see this region's nucleotide sequence