Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0093 and DVU0094 are separated by 231 nucleotides DVU0094 and potD-1 are separated by 140 nucleotides
DVU0093: DVU0093 - conserved domain protein/glycosyl transferase, group 1 family protein (TIGR), at 120,692 to 123,142
DVU0093
DVU0094: DVU0094 - methyl-accepting chemotaxis protein (TIGR), at 123,374 to 125,536
DVU0094
DVU0095: potD-1 - polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR), at 125,677 to 126,714
potD-1
Position (kb) 123
124
125
126 Strain fitness (log2 ratio) -1
0
1
2 at 122.399 kb on - strand, within DVU0093 at 122.408 kb on + strand, within DVU0093 at 122.416 kb on - strand, within DVU0093 at 122.418 kb on + strand, within DVU0093 at 122.436 kb on + strand, within DVU0093 at 122.469 kb on + strand, within DVU0093 at 122.483 kb on + strand, within DVU0093 at 122.500 kb on - strand, within DVU0093 at 122.528 kb on + strand, within DVU0093 at 122.538 kb on + strand, within DVU0093 at 122.546 kb on - strand, within DVU0093 at 122.558 kb on + strand, within DVU0093 at 122.558 kb on + strand, within DVU0093 at 122.566 kb on - strand, within DVU0093 at 122.566 kb on - strand, within DVU0093 at 122.575 kb on + strand, within DVU0093 at 122.644 kb on + strand, within DVU0093 at 122.652 kb on - strand, within DVU0093 at 122.689 kb on + strand, within DVU0093 at 122.696 kb on - strand, within DVU0093 at 122.765 kb on + strand, within DVU0093 at 122.773 kb on - strand, within DVU0093 at 122.773 kb on - strand, within DVU0093 at 122.773 kb on - strand, within DVU0093 at 122.791 kb on - strand, within DVU0093 at 122.811 kb on + strand, within DVU0093 at 122.812 kb on - strand, within DVU0093 at 122.848 kb on + strand, within DVU0093 at 122.853 kb on + strand, within DVU0093 at 122.937 kb on - strand at 123.017 kb on + strand at 123.025 kb on - strand at 123.056 kb on + strand at 123.129 kb on - strand at 123.143 kb on + strand at 123.265 kb on - strand at 123.367 kb on + strand at 123.367 kb on + strand at 123.375 kb on - strand at 123.420 kb on + strand at 123.468 kb on + strand at 123.470 kb on + strand at 123.504 kb on + strand at 123.522 kb on + strand at 123.543 kb on + strand at 123.543 kb on + strand at 123.573 kb on + strand at 123.576 kb on - strand at 123.671 kb on + strand, within DVU0094 at 123.722 kb on + strand, within DVU0094 at 123.786 kb on + strand, within DVU0094 at 123.796 kb on + strand, within DVU0094 at 123.835 kb on + strand, within DVU0094 at 123.968 kb on + strand, within DVU0094 at 123.968 kb on + strand, within DVU0094 at 123.975 kb on + strand, within DVU0094 at 124.156 kb on + strand, within DVU0094 at 124.162 kb on + strand, within DVU0094 at 124.213 kb on - strand, within DVU0094 at 124.291 kb on - strand, within DVU0094 at 124.292 kb on - strand, within DVU0094 at 124.309 kb on + strand, within DVU0094 at 124.316 kb on - strand, within DVU0094 at 124.326 kb on - strand, within DVU0094 at 124.340 kb on + strand, within DVU0094 at 124.361 kb on - strand, within DVU0094 at 124.396 kb on + strand, within DVU0094 at 124.436 kb on - strand, within DVU0094 at 124.463 kb on + strand, within DVU0094 at 124.468 kb on + strand, within DVU0094 at 124.471 kb on - strand, within DVU0094 at 124.495 kb on + strand, within DVU0094 at 124.554 kb on + strand, within DVU0094 at 124.583 kb on + strand, within DVU0094 at 124.682 kb on + strand, within DVU0094 at 124.690 kb on - strand, within DVU0094 at 124.744 kb on - strand, within DVU0094 at 124.758 kb on + strand, within DVU0094 at 124.935 kb on + strand, within DVU0094 at 124.939 kb on - strand, within DVU0094 at 124.955 kb on + strand, within DVU0094 at 124.963 kb on - strand, within DVU0094 at 124.974 kb on - strand, within DVU0094 at 125.202 kb on + strand, within DVU0094 at 125.202 kb on + strand, within DVU0094 at 125.210 kb on - strand, within DVU0094 at 125.220 kb on - strand, within DVU0094 at 125.227 kb on - strand, within DVU0094 at 125.229 kb on + strand, within DVU0094 at 125.229 kb on + strand, within DVU0094 at 125.271 kb on - strand, within DVU0094 at 125.289 kb on + strand, within DVU0094 at 125.297 kb on - strand, within DVU0094 at 125.297 kb on - strand, within DVU0094 at 125.297 kb on - strand, within DVU0094 at 125.345 kb on - strand at 125.345 kb on - strand at 125.531 kb on + strand at 125.531 kb on + strand at 125.531 kb on + strand at 125.531 kb on + strand at 125.531 kb on + strand at 125.531 kb on + strand at 125.539 kb on - strand at 125.539 kb on - strand at 125.539 kb on - strand at 125.539 kb on - strand at 125.689 kb on + strand at 125.697 kb on - strand at 125.707 kb on - strand at 125.869 kb on - strand, within potD-1 at 125.905 kb on + strand, within potD-1 at 126.005 kb on - strand, within potD-1 at 126.050 kb on + strand, within potD-1 at 126.058 kb on - strand, within potD-1 at 126.068 kb on + strand, within potD-1 at 126.236 kb on + strand, within potD-1 at 126.239 kb on - strand, within potD-1 at 126.242 kb on + strand, within potD-1 at 126.244 kb on - strand, within potD-1 at 126.292 kb on + strand, within potD-1 at 126.300 kb on - strand, within potD-1 at 126.315 kb on - strand, within potD-1 at 126.326 kb on - strand, within potD-1 at 126.342 kb on - strand, within potD-1 at 126.378 kb on - strand, within potD-1 at 126.390 kb on + strand, within potD-1 at 126.414 kb on + strand, within potD-1 at 126.490 kb on + strand, within potD-1
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 122,399 - DVU0093 0.70 -0.6 122,408 + DVU0093 0.70 +1.3 122,416 - DVU0093 0.70 -0.5 122,418 + DVU0093 0.70 +0.2 122,436 + DVU0093 0.71 +0.7 122,469 + DVU0093 0.73 +0.9 122,483 + DVU0093 0.73 +0.1 122,500 - DVU0093 0.74 -0.3 122,528 + DVU0093 0.75 -1.1 122,538 + DVU0093 0.75 -0.7 122,546 - DVU0093 0.76 -1.5 122,558 + DVU0093 0.76 -0.0 122,558 + DVU0093 0.76 -0.2 122,566 - DVU0093 0.76 -0.2 122,566 - DVU0093 0.76 +0.6 122,575 + DVU0093 0.77 -0.7 122,644 + DVU0093 0.80 +0.5 122,652 - DVU0093 0.80 -0.0 122,689 + DVU0093 0.81 +2.7 122,696 - DVU0093 0.82 +0.1 122,765 + DVU0093 0.85 +0.2 122,773 - DVU0093 0.85 -1.0 122,773 - DVU0093 0.85 -0.7 122,773 - DVU0093 0.85 -0.4 122,791 - DVU0093 0.86 +0.9 122,811 + DVU0093 0.86 -0.5 122,812 - DVU0093 0.86 -0.9 122,848 + DVU0093 0.88 -1.3 122,853 + DVU0093 0.88 +0.2 122,937 - +0.6 123,017 + -0.4 123,025 - -1.3 123,056 + +0.1 123,129 - +0.5 123,143 + +0.1 123,265 - -0.5 123,367 + -0.5 123,367 + -0.3 123,375 - +0.2 123,420 + -1.4 123,468 + +0.3 123,470 + +0.1 123,504 + +1.0 123,522 + +0.4 123,543 + -1.0 123,543 + +0.2 123,573 + +0.3 123,576 - +0.3 123,671 + DVU0094 0.14 -0.3 123,722 + DVU0094 0.16 +0.6 123,786 + DVU0094 0.19 -0.2 123,796 + DVU0094 0.20 +1.0 123,835 + DVU0094 0.21 +0.8 123,968 + DVU0094 0.27 +0.2 123,968 + DVU0094 0.27 -0.0 123,975 + DVU0094 0.28 +0.2 124,156 + DVU0094 0.36 +0.2 124,162 + DVU0094 0.36 -0.1 124,213 - DVU0094 0.39 +0.5 124,291 - DVU0094 0.42 -0.3 124,292 - DVU0094 0.42 -0.4 124,309 + DVU0094 0.43 -0.1 124,316 - DVU0094 0.44 +1.5 124,326 - DVU0094 0.44 +0.8 124,340 + DVU0094 0.45 +0.3 124,361 - DVU0094 0.46 +0.1 124,396 + DVU0094 0.47 +0.8 124,436 - DVU0094 0.49 +0.6 124,463 + DVU0094 0.50 +0.7 124,468 + DVU0094 0.51 +0.2 124,471 - DVU0094 0.51 -0.8 124,495 + DVU0094 0.52 +0.0 124,554 + DVU0094 0.55 -0.7 124,583 + DVU0094 0.56 +0.1 124,682 + DVU0094 0.60 -0.3 124,690 - DVU0094 0.61 +0.5 124,744 - DVU0094 0.63 +0.4 124,758 + DVU0094 0.64 +0.9 124,935 + DVU0094 0.72 +1.6 124,939 - DVU0094 0.72 -0.2 124,955 + DVU0094 0.73 -0.4 124,963 - DVU0094 0.73 +2.3 124,974 - DVU0094 0.74 -0.2 125,202 + DVU0094 0.85 -0.1 125,202 + DVU0094 0.85 +0.1 125,210 - DVU0094 0.85 +0.4 125,220 - DVU0094 0.85 -0.5 125,227 - DVU0094 0.86 +0.9 125,229 + DVU0094 0.86 -0.1 125,229 + DVU0094 0.86 +0.1 125,271 - DVU0094 0.88 -0.1 125,289 + DVU0094 0.89 -0.1 125,297 - DVU0094 0.89 -0.6 125,297 - DVU0094 0.89 +2.2 125,297 - DVU0094 0.89 +0.8 125,345 - -0.0 125,345 - +0.8 125,531 + -0.8 125,531 + +0.5 125,531 + -0.3 125,531 + -0.1 125,531 + +0.1 125,531 + -0.6 125,539 - -0.0 125,539 - -0.2 125,539 - -0.6 125,539 - -0.1 125,689 + +0.2 125,697 - -0.3 125,707 - +0.1 125,869 - potD-1 DVU0095 0.18 +0.3 125,905 + potD-1 DVU0095 0.22 +0.2 126,005 - potD-1 DVU0095 0.32 -1.2 126,050 + potD-1 DVU0095 0.36 -0.2 126,058 - potD-1 DVU0095 0.37 +2.2 126,068 + potD-1 DVU0095 0.38 -0.3 126,236 + potD-1 DVU0095 0.54 +0.4 126,239 - potD-1 DVU0095 0.54 +0.8 126,242 + potD-1 DVU0095 0.54 -0.1 126,244 - potD-1 DVU0095 0.55 -0.5 126,292 + potD-1 DVU0095 0.59 +1.0 126,300 - potD-1 DVU0095 0.60 +0.2 126,315 - potD-1 DVU0095 0.61 +0.2 126,326 - potD-1 DVU0095 0.63 +0.5 126,342 - potD-1 DVU0095 0.64 +1.6 126,378 - potD-1 DVU0095 0.68 -1.1 126,390 + potD-1 DVU0095 0.69 -0.0 126,414 + potD-1 DVU0095 0.71 -0.1 126,490 + potD-1 DVU0095 0.78 -0.3
Or see this region's nucleotide sequence