Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2101

Experiment: Formate/Acetate-Sulfite (60/5-20 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfite (60/5-20 mM)
2,189,125	-				+0.2
2,189,366	+		DVU2100	0.18	-0.1
2,189,418	-		DVU2100	0.30	+1.1
2,189,418	-		DVU2100	0.30	+0.1
2,189,564	-		DVU2100	0.65	+1.2
2,189,591	-		DVU2100	0.72	-0.6
2,189,616	+		DVU2100	0.78	+1.6
2,189,628	+		DVU2100	0.81	-0.0
2,189,663	-		DVU2100	0.89	+0.6
2,189,684	+				+0.3
2,189,692	-				-0.1
2,189,718	-				-0.1
2,189,757	-				-0.1
2,189,804	-				-0.0
2,190,027	-				-0.2
2,190,081	+				-0.6
2,190,135	-				-0.3
2,190,246	+				+0.2
2,190,290	-				-0.4
2,190,334	-				-0.3
2,190,336	+				-0.2
2,190,344	-				-0.7
2,190,372	+				-0.2
2,190,466	+				-0.4
2,190,502	+		DVU2101	0.11	-0.4
2,190,595	-		DVU2101	0.12	-1.6
2,190,660	+		DVU2101	0.14	-0.4
2,190,660	+		DVU2101	0.14	-0.3
2,190,668	-		DVU2101	0.14	-0.1
2,190,795	+		DVU2101	0.16	-0.7
2,190,833	+		DVU2101	0.17	-0.7
2,190,891	-		DVU2101	0.18	-0.8
2,191,004	+		DVU2101	0.20	-0.6
2,191,036	+		DVU2101	0.21	+0.8
2,191,036	+		DVU2101	0.21	+0.6
2,191,041	+		DVU2101	0.21	-1.3
2,191,044	-		DVU2101	0.21	-0.4
2,191,044	-		DVU2101	0.21	+0.3
2,191,044	-		DVU2101	0.21	-0.7
2,191,086	+		DVU2101	0.22	-0.5
2,191,089	-		DVU2101	0.22	+0.1
2,191,094	-		DVU2101	0.22	-0.7
2,191,141	-		DVU2101	0.23	-0.1
2,191,168	+		DVU2101	0.23	-0.7
2,191,191	-		DVU2101	0.23	-0.6
2,191,201	-		DVU2101	0.24	-0.0
2,191,243	-		DVU2101	0.24	-0.4
2,191,261	+		DVU2101	0.25	-0.3
2,191,263	-		DVU2101	0.25	-0.2
2,191,279	-		DVU2101	0.25	+0.6
2,191,370	+		DVU2101	0.27	-1.0
2,191,375	+		DVU2101	0.27	+0.0
2,191,587	-		DVU2101	0.31	-2.0
2,191,712	-		DVU2101	0.33	-1.1
2,191,785	+		DVU2101	0.35	-1.7
2,191,785	+		DVU2101	0.35	-1.4
2,191,788	-		DVU2101	0.35	+0.0
2,191,788	-		DVU2101	0.35	-0.2
2,191,813	+		DVU2101	0.35	-0.3
2,191,814	-		DVU2101	0.35	-0.7
2,191,821	-		DVU2101	0.35	-0.3
2,191,843	-		DVU2101	0.36	-0.1
2,191,856	+		DVU2101	0.36	-1.0
2,191,875	-		DVU2101	0.36	-1.2
2,191,903	+		DVU2101	0.37	-1.8
2,191,935	+		DVU2101	0.37	-0.2
2,191,958	-		DVU2101	0.38	-0.6
2,192,016	-		DVU2101	0.39	-1.1
2,192,026	-		DVU2101	0.39	-1.1
2,192,045	+		DVU2101	0.39	-0.0
2,192,052	+		DVU2101	0.40	-0.2
2,192,168	+		DVU2101	0.42	-0.4
2,192,286	-		DVU2101	0.44	-0.1
2,192,384	+		DVU2101	0.46	-0.4
2,192,516	+		DVU2101	0.48	-1.0
2,192,529	-		DVU2101	0.48	-0.7
2,192,539	-		DVU2101	0.49	+0.4
2,192,539	-		DVU2101	0.49	-0.3
2,192,654	+		DVU2101	0.51	-1.2
2,192,676	+		DVU2101	0.51	-0.5
2,192,749	+		DVU2101	0.53	-0.3
2,192,915	+		DVU2101	0.56	+0.3
2,192,915	+		DVU2101	0.56	-0.5
2,193,009	-		DVU2101	0.57	+0.5
2,193,081	-		DVU2101	0.59	-0.5
2,193,083	+		DVU2101	0.59	+0.1
2,193,083	+		DVU2101	0.59	-0.5
2,193,083	+		DVU2101	0.59	-0.6
2,193,184	+		DVU2101	0.61	-0.9
2,193,207	+		DVU2101	0.61	+0.1
2,193,215	-		DVU2101	0.61	-0.2
2,193,263	-		DVU2101	0.62	-0.3
2,193,335	-		DVU2101	0.64	-0.7
2,193,360	+		DVU2101	0.64	-0.3
2,193,533	-		DVU2101	0.67	-1.0
2,193,548	+		DVU2101	0.68	-1.9
2,193,599	-		DVU2101	0.68	-0.7
2,193,665	-		DVU2101	0.70	-1.6
2,193,684	-		DVU2101	0.70	-1.1
2,193,741	+		DVU2101	0.71	-0.7
2,193,741	+		DVU2101	0.71	-1.1
2,193,836	+		DVU2101	0.73	-1.1
2,193,877	+		DVU2101	0.74	-0.6
2,193,885	-		DVU2101	0.74	-1.0
2,193,885	-		DVU2101	0.74	+0.6
2,193,914	-		DVU2101	0.74	-0.1
2,193,928	+		DVU2101	0.75	-0.5
2,194,061	-		DVU2101	0.77	-0.4
2,194,111	-		DVU2101	0.78	+0.1
2,194,137	-		DVU2101	0.79	-0.4
2,194,151	+		DVU2101	0.79	-0.5
2,194,208	-		DVU2101	0.80	-0.6
2,194,288	-		DVU2101	0.81	+0.3
2,194,293	-		DVU2101	0.81	-0.8
2,194,293	-		DVU2101	0.81	-0.8
2,194,303	+		DVU2101	0.82	-0.5
2,194,323	+		DVU2101	0.82	-0.5
2,194,373	+		DVU2101	0.83	+0.0
2,194,381	-		DVU2101	0.83	-0.5
2,194,381	-		DVU2101	0.83	+0.0
2,194,550	+		DVU2101	0.86	+0.2
2,194,550	+		DVU2101	0.86	-0.2
2,194,558	-		DVU2101	0.86	-0.4
2,194,558	-		DVU2101	0.86	-0.4
2,194,687	+		DVU2101	0.89	-1.6
2,194,793	-				+1.2
2,194,803	-				-0.8
2,194,938	+				-0.6
2,194,945	+				-1.2
2,194,986	-				-0.4
2,195,044	+				+0.6
2,195,066	+				-0.8
2,195,181	+				-0.3
2,195,227	+				-0.4
2,195,227	+				-0.6
2,195,268	-				-0.1
2,195,278	-				-0.5
2,195,393	-				+0.4
2,195,406	-				-0.1
2,195,449	+				+0.0
2,195,523	-		DVU2102	0.10	-0.4
2,195,589	+		DVU2102	0.13	-0.6
2,195,589	+		DVU2102	0.13	-0.1
2,195,729	-		DVU2102	0.19	-0.1
2,195,776	+		DVU2102	0.21	-0.4
2,195,781	+		DVU2102	0.21	+0.3
2,196,004	+		DVU2102	0.31	+0.5
2,196,020	-		DVU2102	0.32	-0.7
2,196,063	+		DVU2102	0.33	-1.2
2,196,127	+		DVU2102	0.36	-0.7