Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dcm and DVU1516 are separated by 202 nucleotides DVU1516 and DVU1517 overlap by 4 nucleotides DVU1517 and DVU1518 are separated by 210 nucleotides DVU1518 and DVU1519 are separated by 56 nucleotides
DVU1515: dcm - type II DNA modification methyltransferase, putative (TIGR), at 1,585,461 to 1,586,924
dcm
DVU1516: DVU1516 - hypothetical protein (TIGR), at 1,587,127 to 1,587,486
DVU1516
DVU1517: DVU1517 - transcriptional regulator cII, putative (TIGR), at 1,587,483 to 1,587,896
DVU1517
DVU1518: DVU1518 - transcriptional regulator cI, truncation (TIGR), at 1,588,107 to 1,588,397
DVU1518
DVU1519: DVU1519 - transcriptional regulator, putative (TIGR), at 1,588,454 to 1,589,107
DVU1519
Position (kb)
1587
1588 Strain fitness (log2 ratio)
-2
-1
0
1 at 1586.208 kb on - strand, within dcm at 1586.213 kb on + strand, within dcm at 1586.258 kb on - strand, within dcm at 1586.424 kb on + strand, within dcm at 1586.664 kb on + strand, within dcm at 1586.680 kb on + strand, within dcm at 1586.683 kb on - strand, within dcm at 1586.688 kb on - strand, within dcm at 1586.688 kb on - strand, within dcm at 1586.748 kb on - strand, within dcm at 1586.753 kb on + strand, within dcm at 1586.753 kb on + strand, within dcm at 1586.792 kb on - strand at 1586.794 kb on + strand at 1586.927 kb on - strand at 1587.009 kb on + strand at 1587.064 kb on + strand at 1587.084 kb on - strand at 1587.276 kb on + strand, within DVU1516 at 1587.288 kb on + strand, within DVU1516 at 1587.346 kb on + strand, within DVU1516 at 1587.346 kb on + strand, within DVU1516 at 1587.354 kb on - strand, within DVU1516 at 1587.426 kb on + strand, within DVU1516 at 1587.478 kb on + strand at 1587.557 kb on + strand, within DVU1517 at 1587.558 kb on - strand, within DVU1517 at 1587.565 kb on - strand, within DVU1517 at 1587.565 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.570 kb on - strand, within DVU1517 at 1587.707 kb on - strand, within DVU1517 at 1587.708 kb on - strand, within DVU1517 at 1587.780 kb on + strand, within DVU1517 at 1587.805 kb on + strand, within DVU1517 at 1587.908 kb on + strand at 1587.944 kb on + strand at 1587.944 kb on + strand at 1587.958 kb on + strand at 1588.050 kb on - strand at 1588.105 kb on + strand at 1588.113 kb on - strand at 1588.166 kb on + strand, within DVU1518 at 1588.195 kb on - strand, within DVU1518 at 1588.210 kb on - strand, within DVU1518
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 1,586,208 - dcm DVU1515 0.51 +0.8 1,586,213 + dcm DVU1515 0.51 +0.1 1,586,258 - dcm DVU1515 0.54 -0.6 1,586,424 + dcm DVU1515 0.66 -0.7 1,586,664 + dcm DVU1515 0.82 +0.0 1,586,680 + dcm DVU1515 0.83 -0.5 1,586,683 - dcm DVU1515 0.83 -0.6 1,586,688 - dcm DVU1515 0.84 +0.3 1,586,688 - dcm DVU1515 0.84 +0.1 1,586,748 - dcm DVU1515 0.88 -0.8 1,586,753 + dcm DVU1515 0.88 -0.0 1,586,753 + dcm DVU1515 0.88 -0.3 1,586,792 - -1.1 1,586,794 + +0.0 1,586,927 - -1.5 1,587,009 + -0.1 1,587,064 + -1.6 1,587,084 - -0.3 1,587,276 + DVU1516 0.41 -0.7 1,587,288 + DVU1516 0.45 -0.7 1,587,346 + DVU1516 0.61 -2.1 1,587,346 + DVU1516 0.61 -0.2 1,587,354 - DVU1516 0.63 -0.6 1,587,426 + DVU1516 0.83 +0.3 1,587,478 + -0.1 1,587,557 + DVU1517 0.18 -0.3 1,587,558 - DVU1517 0.18 +0.8 1,587,565 - DVU1517 0.20 -0.1 1,587,565 - DVU1517 0.20 +0.2 1,587,570 - DVU1517 0.21 -0.6 1,587,570 - DVU1517 0.21 -0.3 1,587,570 - DVU1517 0.21 +0.2 1,587,707 - DVU1517 0.54 +0.2 1,587,708 - DVU1517 0.54 -0.1 1,587,780 + DVU1517 0.72 -0.3 1,587,805 + DVU1517 0.78 -0.1 1,587,908 + -0.4 1,587,944 + -0.3 1,587,944 + -0.0 1,587,958 + -0.7 1,588,050 - -0.7 1,588,105 + -0.1 1,588,113 - -1.6 1,588,166 + DVU1518 0.20 -0.8 1,588,195 - DVU1518 0.30 -0.9 1,588,210 - DVU1518 0.35 +0.0
Or see this region's nucleotide sequence