Experiment: Formate/Acetate-Sulfite (60/5-20 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0933 and DVU0934 overlap by 20 nucleotides DVU0934 and DVU0935 overlap by 4 nucleotides
DVU0933: DVU0933 - response regulator (TIGR), at 1,023,539 to 1,024,783
DVU0933
DVU0934: DVU0934 - hypothetical protein (TIGR), at 1,024,764 to 1,025,024
DVU0934
DVU0935: DVU0935 - methyl-accepting chemotaxis protein (TIGR), at 1,025,021 to 1,027,525
DVU0935
Position (kb)
1024
1025
1026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1023.780 kb on + strand, within DVU0933 at 1023.798 kb on - strand, within DVU0933 at 1023.806 kb on + strand, within DVU0933 at 1023.811 kb on + strand, within DVU0933 at 1023.814 kb on - strand, within DVU0933 at 1023.936 kb on - strand, within DVU0933 at 1024.038 kb on + strand, within DVU0933 at 1024.106 kb on + strand, within DVU0933 at 1024.228 kb on + strand, within DVU0933 at 1024.228 kb on + strand, within DVU0933 at 1024.236 kb on - strand, within DVU0933 at 1024.236 kb on - strand, within DVU0933 at 1024.236 kb on - strand, within DVU0933 at 1024.236 kb on - strand, within DVU0933 at 1024.351 kb on + strand, within DVU0933 at 1024.377 kb on + strand, within DVU0933 at 1024.390 kb on + strand, within DVU0933 at 1024.398 kb on - strand, within DVU0933 at 1024.452 kb on + strand, within DVU0933 at 1024.465 kb on + strand, within DVU0933 at 1024.539 kb on - strand, within DVU0933 at 1024.539 kb on - strand, within DVU0933 at 1024.680 kb on + strand at 1024.716 kb on - strand at 1024.821 kb on - strand, within DVU0934 at 1024.964 kb on + strand, within DVU0934 at 1024.964 kb on + strand, within DVU0934 at 1024.972 kb on - strand, within DVU0934 at 1025.097 kb on - strand at 1025.102 kb on - strand at 1025.157 kb on + strand at 1025.187 kb on + strand at 1025.326 kb on + strand, within DVU0935 at 1025.334 kb on - strand, within DVU0935 at 1025.404 kb on - strand, within DVU0935 at 1025.418 kb on - strand, within DVU0935 at 1025.485 kb on + strand, within DVU0935 at 1025.532 kb on + strand, within DVU0935 at 1025.540 kb on - strand, within DVU0935 at 1025.565 kb on + strand, within DVU0935 at 1025.583 kb on - strand, within DVU0935 at 1025.745 kb on + strand, within DVU0935 at 1025.814 kb on + strand, within DVU0935 at 1025.822 kb on - strand, within DVU0935
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/5-20 mM) remove 1,023,780 + DVU0933 0.19 +0.0 1,023,798 - DVU0933 0.21 +2.6 1,023,806 + DVU0933 0.21 -0.4 1,023,811 + DVU0933 0.22 -0.1 1,023,814 - DVU0933 0.22 -2.8 1,023,936 - DVU0933 0.32 -0.8 1,024,038 + DVU0933 0.40 -1.2 1,024,106 + DVU0933 0.46 -0.6 1,024,228 + DVU0933 0.55 -0.4 1,024,228 + DVU0933 0.55 -0.1 1,024,236 - DVU0933 0.56 -0.3 1,024,236 - DVU0933 0.56 +0.1 1,024,236 - DVU0933 0.56 -0.4 1,024,236 - DVU0933 0.56 -0.2 1,024,351 + DVU0933 0.65 +0.0 1,024,377 + DVU0933 0.67 -0.7 1,024,390 + DVU0933 0.68 -0.3 1,024,398 - DVU0933 0.69 +0.2 1,024,452 + DVU0933 0.73 +1.2 1,024,465 + DVU0933 0.74 +1.0 1,024,539 - DVU0933 0.80 -0.2 1,024,539 - DVU0933 0.80 +0.3 1,024,680 + -1.4 1,024,716 - -0.4 1,024,821 - DVU0934 0.22 -0.5 1,024,964 + DVU0934 0.77 -0.4 1,024,964 + DVU0934 0.77 -1.8 1,024,972 - DVU0934 0.80 -0.5 1,025,097 - +0.1 1,025,102 - -0.0 1,025,157 + +0.0 1,025,187 + +0.1 1,025,326 + DVU0935 0.12 -0.1 1,025,334 - DVU0935 0.12 -0.4 1,025,404 - DVU0935 0.15 -1.0 1,025,418 - DVU0935 0.16 +0.5 1,025,485 + DVU0935 0.19 -0.1 1,025,532 + DVU0935 0.20 -0.9 1,025,540 - DVU0935 0.21 +0.0 1,025,565 + DVU0935 0.22 -0.3 1,025,583 - DVU0935 0.22 -0.4 1,025,745 + DVU0935 0.29 -0.7 1,025,814 + DVU0935 0.32 +1.0 1,025,822 - DVU0935 0.32 -0.1
Or see this region's nucleotide sequence