Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_565 and Pf6N2E2_566 are separated by 165 nucleotides Pf6N2E2_566 and Pf6N2E2_567 are separated by 185 nucleotides Pf6N2E2_567 and Pf6N2E2_568 are separated by 178 nucleotides Pf6N2E2_568 and Pf6N2E2_569 are separated by 197 nucleotides
Pf6N2E2_565 - hypothetical protein, at 641,187 to 641,402
_565
Pf6N2E2_566 - hypothetical protein, at 641,568 to 642,038
_566
Pf6N2E2_567 - Universal stress protein family 7, at 642,224 to 643,087
_567
Pf6N2E2_568 - tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-), at 643,266 to 643,871
_568
Pf6N2E2_569 - FIG00793915: hypothetical protein, at 644,069 to 644,557
_569
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 641.422 kb on - strand at 641.422 kb on - strand at 641.440 kb on - strand at 641.440 kb on - strand at 641.480 kb on - strand at 641.997 kb on + strand at 641.997 kb on + strand at 641.997 kb on + strand at 641.997 kb on + strand at 641.998 kb on - strand at 642.001 kb on + strand at 642.002 kb on - strand at 642.329 kb on + strand, within Pf6N2E2_567 at 642.330 kb on - strand, within Pf6N2E2_567 at 642.330 kb on - strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.405 kb on + strand, within Pf6N2E2_567 at 642.406 kb on - strand, within Pf6N2E2_567 at 642.406 kb on - strand, within Pf6N2E2_567 at 642.406 kb on - strand, within Pf6N2E2_567 at 643.130 kb on + strand at 643.130 kb on + strand at 643.130 kb on + strand at 643.130 kb on + strand at 643.130 kb on + strand at 643.131 kb on - strand at 643.132 kb on + strand at 643.132 kb on + strand at 643.132 kb on + strand at 643.132 kb on + strand at 643.133 kb on - strand at 643.133 kb on - strand at 643.133 kb on - strand at 643.133 kb on - strand at 643.151 kb on + strand at 643.151 kb on + strand at 643.152 kb on - strand at 643.185 kb on - strand at 643.223 kb on - strand at 643.223 kb on - strand at 643.224 kb on + strand at 643.225 kb on - strand at 643.247 kb on - strand at 643.247 kb on - strand at 643.416 kb on + strand, within Pf6N2E2_568 at 643.416 kb on + strand, within Pf6N2E2_568 at 643.417 kb on - strand, within Pf6N2E2_568 at 643.417 kb on - strand, within Pf6N2E2_568 at 643.417 kb on - strand, within Pf6N2E2_568 at 643.546 kb on - strand, within Pf6N2E2_568 at 643.570 kb on + strand, within Pf6N2E2_568 at 643.571 kb on - strand, within Pf6N2E2_568 at 643.693 kb on - strand, within Pf6N2E2_568 at 643.734 kb on + strand, within Pf6N2E2_568 at 643.734 kb on + strand, within Pf6N2E2_568 at 643.870 kb on - strand at 643.882 kb on + strand at 643.883 kb on - strand at 643.895 kb on + strand at 643.921 kb on + strand at 643.921 kb on + strand at 643.921 kb on + strand at 643.921 kb on + strand at 643.922 kb on - strand at 643.947 kb on + strand at 643.947 kb on + strand at 644.053 kb on - strand at 644.070 kb on + strand at 644.070 kb on + strand at 644.070 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 641,422 - +1.8 641,422 - +1.6 641,440 - +0.7 641,440 - +1.1 641,480 - +2.4 641,997 + +1.4 641,997 + +1.4 641,997 + +1.2 641,997 + +1.2 641,998 - -0.2 642,001 + +1.3 642,002 - +1.3 642,329 + Pf6N2E2_567 0.12 +1.3 642,330 - Pf6N2E2_567 0.12 -0.8 642,330 - Pf6N2E2_567 0.12 +0.3 642,405 + Pf6N2E2_567 0.21 +1.4 642,405 + Pf6N2E2_567 0.21 +0.6 642,405 + Pf6N2E2_567 0.21 +0.3 642,405 + Pf6N2E2_567 0.21 +1.3 642,405 + Pf6N2E2_567 0.21 +1.2 642,405 + Pf6N2E2_567 0.21 +1.2 642,405 + Pf6N2E2_567 0.21 +0.6 642,405 + Pf6N2E2_567 0.21 +1.2 642,406 - Pf6N2E2_567 0.21 +0.1 642,406 - Pf6N2E2_567 0.21 +0.5 642,406 - Pf6N2E2_567 0.21 -2.2 643,130 + +0.1 643,130 + +0.4 643,130 + +0.5 643,130 + +1.8 643,130 + +0.3 643,131 - +0.1 643,132 + +0.4 643,132 + -1.5 643,132 + +3.7 643,132 + +0.1 643,133 - +2.2 643,133 - -0.3 643,133 - -2.0 643,133 - +0.8 643,151 + +0.4 643,151 + -0.5 643,152 - +0.5 643,185 - -0.7 643,223 - -0.7 643,223 - -1.2 643,224 + +0.6 643,225 - -0.4 643,247 - +0.5 643,247 - -0.3 643,416 + Pf6N2E2_568 0.25 -0.9 643,416 + Pf6N2E2_568 0.25 +0.7 643,417 - Pf6N2E2_568 0.25 -0.7 643,417 - Pf6N2E2_568 0.25 +0.6 643,417 - Pf6N2E2_568 0.25 -0.2 643,546 - Pf6N2E2_568 0.46 -0.1 643,570 + Pf6N2E2_568 0.50 +0.4 643,571 - Pf6N2E2_568 0.50 +0.3 643,693 - Pf6N2E2_568 0.70 +0.2 643,734 + Pf6N2E2_568 0.77 +0.8 643,734 + Pf6N2E2_568 0.77 -0.2 643,870 - -0.2 643,882 + -0.2 643,883 - +0.9 643,895 + +3.2 643,921 + -0.6 643,921 + +0.5 643,921 + -0.6 643,921 + +1.9 643,922 - +0.7 643,947 + -0.2 643,947 + +0.9 644,053 - +1.4 644,070 + +0.2 644,070 + +1.1 644,070 + +1.2
Or see this region's nucleotide sequence