Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5421

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5420 and Pf6N2E2_5421 are separated by 530 nucleotidesPf6N2E2_5421 and Pf6N2E2_5422 overlap by 8 nucleotides Pf6N2E2_5420 - Cytosol aminopeptidase PepA (EC 3.4.11.1), at 6,224,414 to 6,225,904 _5420 Pf6N2E2_5421 - FIG000988: Predicted permease, at 6,226,435 to 6,227,556 _5421 Pf6N2E2_5422 - FIG000906: Predicted Permease, at 6,227,549 to 6,228,610 _5422 Position (kb) 6226 6227 6228Strain fitness (log2 ratio) -1 0 1 2 3at 6225.538 kb on - strand, within Pf6N2E2_5420at 6225.722 kb on + strand, within Pf6N2E2_5420at 6225.722 kb on + strand, within Pf6N2E2_5420at 6225.722 kb on + strand, within Pf6N2E2_5420at 6225.890 kb on + strandat 6225.891 kb on - strandat 6226.144 kb on + strandat 6226.145 kb on - strandat 6226.156 kb on + strandat 6226.156 kb on + strandat 6226.156 kb on + strandat 6226.157 kb on - strandat 6226.240 kb on + strandat 6226.273 kb on + strandat 6226.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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6,225,538 - Pf6N2E2_5420 0.75 +3.2
6,225,722 + Pf6N2E2_5420 0.88 +2.5
6,225,722 + Pf6N2E2_5420 0.88 +3.3
6,225,722 + Pf6N2E2_5420 0.88 +2.6
6,225,890 + +2.7
6,225,891 - +3.6
6,226,144 + +0.2
6,226,145 - +0.9
6,226,156 + -0.4
6,226,156 + +0.5
6,226,156 + +0.9
6,226,157 - +0.8
6,226,240 + -0.1
6,226,273 + +2.1
6,226,399 + +2.8

Or see this region's nucleotide sequence