Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_530

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_529 and Pf6N2E2_530 are separated by 171 nucleotidesPf6N2E2_530 and Pf6N2E2_531 are separated by 140 nucleotides Pf6N2E2_529 - FIG00954439: hypothetical protein, at 598,747 to 599,196 _529 Pf6N2E2_530 - Histidine transporter, periplasmic histidine-binding protein, at 599,368 to 600,378 _530 Pf6N2E2_531 - FIG00966599: hypothetical protein, at 600,519 to 600,956 _531 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 598.369 kb on + strandat 598.393 kb on + strandat 598.425 kb on + strandat 598.426 kb on - strandat 598.429 kb on + strandat 598.429 kb on + strandat 598.429 kb on + strandat 598.430 kb on - strandat 598.430 kb on - strandat 598.430 kb on - strandat 598.495 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.582 kb on + strandat 598.583 kb on - strandat 598.583 kb on - strandat 598.583 kb on - strandat 598.583 kb on - strandat 598.583 kb on - strandat 598.583 kb on - strandat 598.584 kb on + strandat 598.584 kb on + strandat 598.584 kb on + strandat 598.584 kb on + strandat 598.585 kb on - strandat 598.646 kb on + strandat 598.655 kb on - strandat 598.734 kb on - strandat 598.734 kb on - strandat 598.734 kb on - strandat 598.737 kb on + strandat 598.737 kb on + strandat 598.737 kb on + strandat 598.757 kb on + strandat 598.764 kb on - strandat 598.764 kb on - strandat 598.816 kb on + strand, within Pf6N2E2_529at 598.816 kb on + strand, within Pf6N2E2_529at 598.817 kb on - strand, within Pf6N2E2_529at 598.842 kb on + strand, within Pf6N2E2_529at 598.843 kb on - strand, within Pf6N2E2_529at 598.843 kb on - strand, within Pf6N2E2_529at 598.846 kb on + strand, within Pf6N2E2_529at 598.846 kb on + strand, within Pf6N2E2_529at 598.846 kb on + strand, within Pf6N2E2_529at 598.846 kb on + strand, within Pf6N2E2_529at 598.847 kb on - strand, within Pf6N2E2_529at 598.847 kb on - strand, within Pf6N2E2_529at 598.847 kb on - strand, within Pf6N2E2_529at 598.847 kb on - strand, within Pf6N2E2_529at 598.847 kb on - strand, within Pf6N2E2_529at 598.999 kb on + strand, within Pf6N2E2_529at 599.014 kb on + strand, within Pf6N2E2_529at 599.298 kb on + strandat 599.298 kb on + strandat 599.354 kb on - strandat 599.569 kb on - strand, within Pf6N2E2_530at 599.725 kb on + strand, within Pf6N2E2_530at 599.726 kb on - strand, within Pf6N2E2_530at 599.803 kb on + strand, within Pf6N2E2_530at 599.926 kb on + strand, within Pf6N2E2_530at 599.926 kb on + strand, within Pf6N2E2_530at 599.926 kb on + strand, within Pf6N2E2_530at 599.926 kb on + strand, within Pf6N2E2_530at 599.926 kb on + strand, within Pf6N2E2_530at 599.927 kb on - strand, within Pf6N2E2_530at 599.927 kb on - strand, within Pf6N2E2_530at 599.927 kb on - strand, within Pf6N2E2_530at 600.010 kb on + strand, within Pf6N2E2_530at 600.010 kb on + strand, within Pf6N2E2_530at 600.010 kb on + strand, within Pf6N2E2_530at 600.011 kb on - strand, within Pf6N2E2_530at 600.013 kb on + strand, within Pf6N2E2_530at 600.013 kb on + strand, within Pf6N2E2_530at 600.014 kb on - strand, within Pf6N2E2_530at 600.357 kb on + strandat 600.357 kb on + strandat 600.358 kb on - strandat 600.358 kb on - strandat 600.358 kb on - strandat 600.358 kb on - strandat 600.358 kb on - strandat 600.376 kb on + strandat 600.377 kb on - strandat 600.449 kb on + strandat 600.449 kb on + strandat 600.482 kb on - strandat 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.578 kb on + strand, within Pf6N2E2_531at 600.582 kb on + strand, within Pf6N2E2_531at 600.582 kb on + strand, within Pf6N2E2_531at 600.582 kb on + strand, within Pf6N2E2_531at 600.582 kb on + strand, within Pf6N2E2_531at 600.582 kb on + strand, within Pf6N2E2_531at 600.582 kb on + strand, within Pf6N2E2_531at 600.583 kb on - strand, within Pf6N2E2_531at 600.583 kb on - strand, within Pf6N2E2_531at 600.583 kb on - strand, within Pf6N2E2_531at 600.583 kb on - strand, within Pf6N2E2_531at 601.169 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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598,369 + +0.9
598,393 + +1.1
598,425 + -0.2
598,426 - +0.3
598,429 + +0.9
598,429 + +0.4
598,429 + -0.3
598,430 - +2.1
598,430 - -0.4
598,430 - -1.1
598,495 + +0.7
598,582 + -0.1
598,582 + -0.4
598,582 + -0.2
598,582 + +0.4
598,582 + -0.1
598,582 + +0.5
598,582 + +0.4
598,582 + -1.2
598,582 + +0.7
598,582 + +0.2
598,582 + -1.3
598,582 + -0.4
598,582 + +0.7
598,583 - +0.7
598,583 - +0.5
598,583 - -0.8
598,583 - +0.6
598,583 - +1.1
598,583 - +0.9
598,584 + +0.8
598,584 + +0.9
598,584 + +0.9
598,584 + -0.6
598,585 - +0.6
598,646 + -0.7
598,655 - -1.5
598,734 - -1.3
598,734 - -0.3
598,734 - -0.4
598,737 + +0.2
598,737 + +0.1
598,737 + +0.6
598,757 + -2.6
598,764 - +0.3
598,764 - -0.3
598,816 + Pf6N2E2_529 0.15 -2.4
598,816 + Pf6N2E2_529 0.15 -0.2
598,817 - Pf6N2E2_529 0.16 -0.1
598,842 + Pf6N2E2_529 0.21 -0.4
598,843 - Pf6N2E2_529 0.21 +1.2
598,843 - Pf6N2E2_529 0.21 +0.1
598,846 + Pf6N2E2_529 0.22 -1.0
598,846 + Pf6N2E2_529 0.22 +0.5
598,846 + Pf6N2E2_529 0.22 +0.7
598,846 + Pf6N2E2_529 0.22 -0.1
598,847 - Pf6N2E2_529 0.22 +1.3
598,847 - Pf6N2E2_529 0.22 -0.6
598,847 - Pf6N2E2_529 0.22 +0.3
598,847 - Pf6N2E2_529 0.22 -0.1
598,847 - Pf6N2E2_529 0.22 +0.8
598,999 + Pf6N2E2_529 0.56 +0.5
599,014 + Pf6N2E2_529 0.59 +1.1
599,298 + -1.0
599,298 + -1.1
599,354 - -1.5
599,569 - Pf6N2E2_530 0.20 -1.1
599,725 + Pf6N2E2_530 0.35 +1.9
599,726 - Pf6N2E2_530 0.35 +0.9
599,803 + Pf6N2E2_530 0.43 +2.2
599,926 + Pf6N2E2_530 0.55 +2.4
599,926 + Pf6N2E2_530 0.55 -1.1
599,926 + Pf6N2E2_530 0.55 -2.1
599,926 + Pf6N2E2_530 0.55 -2.1
599,926 + Pf6N2E2_530 0.55 +0.8
599,927 - Pf6N2E2_530 0.55 +0.8
599,927 - Pf6N2E2_530 0.55 +1.2
599,927 - Pf6N2E2_530 0.55 +0.9
600,010 + Pf6N2E2_530 0.64 +0.5
600,010 + Pf6N2E2_530 0.64 -0.9
600,010 + Pf6N2E2_530 0.64 +1.5
600,011 - Pf6N2E2_530 0.64 +0.5
600,013 + Pf6N2E2_530 0.64 -0.2
600,013 + Pf6N2E2_530 0.64 +0.3
600,014 - Pf6N2E2_530 0.64 +1.3
600,357 + +0.6
600,357 + -1.3
600,358 - -1.2
600,358 - -1.0
600,358 - +1.1
600,358 - -1.4
600,358 - -0.2
600,376 + -2.7
600,377 - +0.7
600,449 + +0.4
600,449 + -0.4
600,482 - -0.3
600,578 + Pf6N2E2_531 0.13 -0.1
600,578 + Pf6N2E2_531 0.13 -0.8
600,578 + Pf6N2E2_531 0.13 +0.2
600,578 + Pf6N2E2_531 0.13 -0.6
600,578 + Pf6N2E2_531 0.13 -1.7
600,578 + Pf6N2E2_531 0.13 -0.8
600,578 + Pf6N2E2_531 0.13 -0.4
600,578 + Pf6N2E2_531 0.13 -0.2
600,582 + Pf6N2E2_531 0.14 +0.5
600,582 + Pf6N2E2_531 0.14 +0.6
600,582 + Pf6N2E2_531 0.14 -1.2
600,582 + Pf6N2E2_531 0.14 +0.3
600,582 + Pf6N2E2_531 0.14 +0.3
600,582 + Pf6N2E2_531 0.14 +0.3
600,583 - Pf6N2E2_531 0.15 +1.0
600,583 - Pf6N2E2_531 0.15 -0.1
600,583 - Pf6N2E2_531 0.15 +0.3
600,583 - Pf6N2E2_531 0.15 +1.7
601,169 + +0.7

Or see this region's nucleotide sequence