Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1710 and Pf6N2E2_1711 are separated by 116 nucleotides Pf6N2E2_1711 and Pf6N2E2_1712 overlap by 14 nucleotides Pf6N2E2_1712 and Pf6N2E2_1713 are separated by 5 nucleotides
Pf6N2E2_1710 - FIG00953587: hypothetical protein, at 2,018,582 to 2,019,856
_1710
Pf6N2E2_1711 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 2,019,973 to 2,020,857
_1711
Pf6N2E2_1712 - Permease of the drug/metabolite transporter (DMT) superfamily, at 2,020,844 to 2,021,749
_1712
Pf6N2E2_1713 - iron-sulfur flavoprotein, at 2,021,755 to 2,022,366
_1713
Position (kb)
2019
2020
2021 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2019.029 kb on + strand, within Pf6N2E2_1710 at 2019.029 kb on + strand, within Pf6N2E2_1710 at 2019.029 kb on + strand, within Pf6N2E2_1710 at 2019.029 kb on + strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.030 kb on - strand, within Pf6N2E2_1710 at 2019.031 kb on + strand, within Pf6N2E2_1710 at 2019.105 kb on + strand, within Pf6N2E2_1710 at 2019.106 kb on - strand, within Pf6N2E2_1710 at 2019.123 kb on + strand, within Pf6N2E2_1710 at 2019.363 kb on + strand, within Pf6N2E2_1710 at 2019.364 kb on - strand, within Pf6N2E2_1710 at 2019.364 kb on - strand, within Pf6N2E2_1710 at 2019.442 kb on - strand, within Pf6N2E2_1710 at 2019.576 kb on + strand, within Pf6N2E2_1710 at 2019.577 kb on - strand, within Pf6N2E2_1710 at 2019.751 kb on - strand at 2019.839 kb on - strand at 2019.847 kb on + strand at 2019.847 kb on + strand at 2020.037 kb on + strand at 2020.123 kb on + strand, within Pf6N2E2_1711 at 2020.123 kb on + strand, within Pf6N2E2_1711 at 2020.124 kb on - strand, within Pf6N2E2_1711 at 2020.399 kb on + strand, within Pf6N2E2_1711 at 2020.472 kb on + strand, within Pf6N2E2_1711 at 2020.473 kb on - strand, within Pf6N2E2_1711 at 2020.473 kb on - strand, within Pf6N2E2_1711 at 2021.118 kb on + strand, within Pf6N2E2_1712 at 2021.118 kb on + strand, within Pf6N2E2_1712 at 2021.119 kb on - strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.488 kb on + strand, within Pf6N2E2_1712 at 2021.518 kb on - strand, within Pf6N2E2_1712
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 2,019,029 + Pf6N2E2_1710 0.35 -1.6 2,019,029 + Pf6N2E2_1710 0.35 +1.4 2,019,029 + Pf6N2E2_1710 0.35 -0.5 2,019,029 + Pf6N2E2_1710 0.35 +0.8 2,019,030 - Pf6N2E2_1710 0.35 +1.3 2,019,030 - Pf6N2E2_1710 0.35 -1.2 2,019,030 - Pf6N2E2_1710 0.35 -3.7 2,019,030 - Pf6N2E2_1710 0.35 +0.8 2,019,030 - Pf6N2E2_1710 0.35 +1.1 2,019,030 - Pf6N2E2_1710 0.35 +0.7 2,019,030 - Pf6N2E2_1710 0.35 +0.8 2,019,030 - Pf6N2E2_1710 0.35 -0.3 2,019,031 + Pf6N2E2_1710 0.35 +1.7 2,019,105 + Pf6N2E2_1710 0.41 -1.1 2,019,106 - Pf6N2E2_1710 0.41 -0.2 2,019,123 + Pf6N2E2_1710 0.42 -0.1 2,019,363 + Pf6N2E2_1710 0.61 -1.0 2,019,364 - Pf6N2E2_1710 0.61 +0.8 2,019,364 - Pf6N2E2_1710 0.61 +0.2 2,019,442 - Pf6N2E2_1710 0.67 +1.3 2,019,576 + Pf6N2E2_1710 0.78 +0.3 2,019,577 - Pf6N2E2_1710 0.78 +0.3 2,019,751 - -0.0 2,019,839 - -0.1 2,019,847 + +0.3 2,019,847 + -0.7 2,020,037 + +0.2 2,020,123 + Pf6N2E2_1711 0.17 -0.4 2,020,123 + Pf6N2E2_1711 0.17 +0.2 2,020,124 - Pf6N2E2_1711 0.17 +1.3 2,020,399 + Pf6N2E2_1711 0.48 +0.1 2,020,472 + Pf6N2E2_1711 0.56 -3.3 2,020,473 - Pf6N2E2_1711 0.56 +0.3 2,020,473 - Pf6N2E2_1711 0.56 +0.1 2,021,118 + Pf6N2E2_1712 0.30 +0.4 2,021,118 + Pf6N2E2_1712 0.30 -0.2 2,021,119 - Pf6N2E2_1712 0.30 -0.4 2,021,488 + Pf6N2E2_1712 0.71 -0.0 2,021,488 + Pf6N2E2_1712 0.71 +1.6 2,021,488 + Pf6N2E2_1712 0.71 +0.5 2,021,518 - Pf6N2E2_1712 0.74 -0.9
Or see this region's nucleotide sequence