Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1156

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1155 and Pf6N2E2_1156 overlap by 29 nucleotidesPf6N2E2_1156 and Pf6N2E2_1157 are separated by 39 nucleotidesPf6N2E2_1157 and Pf6N2E2_1158 are separated by 92 nucleotides Pf6N2E2_1155 - Cyn operon transcriptional activator, at 1,352,699 to 1,353,706 _1155 Pf6N2E2_1156 - hypothetical protein, at 1,353,678 to 1,354,211 _1156 Pf6N2E2_1157 - hypothetical protein possibly connected to lactam utilization and allophanate hydrolase, at 1,354,251 to 1,355,042 _1157 Pf6N2E2_1158 - Cyn operon transcriptional activator, at 1,355,135 to 1,356,082 _1158 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -3 -2 -1 0 1at 1353.053 kb on + strand, within Pf6N2E2_1155at 1353.087 kb on + strand, within Pf6N2E2_1155at 1353.088 kb on - strand, within Pf6N2E2_1155at 1353.158 kb on + strand, within Pf6N2E2_1155at 1353.158 kb on + strand, within Pf6N2E2_1155at 1353.158 kb on + strand, within Pf6N2E2_1155at 1353.158 kb on + strand, within Pf6N2E2_1155at 1353.159 kb on - strand, within Pf6N2E2_1155at 1353.159 kb on - strand, within Pf6N2E2_1155at 1353.159 kb on - strand, within Pf6N2E2_1155at 1353.159 kb on - strand, within Pf6N2E2_1155at 1353.159 kb on - strand, within Pf6N2E2_1155at 1353.420 kb on + strand, within Pf6N2E2_1155at 1353.421 kb on - strand, within Pf6N2E2_1155at 1353.889 kb on + strand, within Pf6N2E2_1156at 1353.890 kb on - strand, within Pf6N2E2_1156at 1353.890 kb on - strand, within Pf6N2E2_1156at 1354.003 kb on + strand, within Pf6N2E2_1156at 1354.130 kb on + strand, within Pf6N2E2_1156at 1354.130 kb on + strand, within Pf6N2E2_1156at 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.180 kb on + strandat 1354.181 kb on - strandat 1354.253 kb on - strandat 1354.270 kb on - strandat 1354.350 kb on + strand, within Pf6N2E2_1157at 1354.350 kb on + strand, within Pf6N2E2_1157at 1354.408 kb on + strand, within Pf6N2E2_1157at 1354.461 kb on + strand, within Pf6N2E2_1157at 1354.762 kb on + strand, within Pf6N2E2_1157at 1354.779 kb on + strand, within Pf6N2E2_1157at 1354.780 kb on - strand, within Pf6N2E2_1157at 1354.973 kb on - strandat 1355.109 kb on + strandat 1355.109 kb on + strandat 1355.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,353,053 + Pf6N2E2_1155 0.35 +0.9
1,353,087 + Pf6N2E2_1155 0.38 -1.0
1,353,088 - Pf6N2E2_1155 0.39 +1.1
1,353,158 + Pf6N2E2_1155 0.46 +0.4
1,353,158 + Pf6N2E2_1155 0.46 +0.2
1,353,158 + Pf6N2E2_1155 0.46 -0.3
1,353,158 + Pf6N2E2_1155 0.46 +1.4
1,353,159 - Pf6N2E2_1155 0.46 -2.2
1,353,159 - Pf6N2E2_1155 0.46 +1.1
1,353,159 - Pf6N2E2_1155 0.46 +1.3
1,353,159 - Pf6N2E2_1155 0.46 +1.3
1,353,159 - Pf6N2E2_1155 0.46 -0.6
1,353,420 + Pf6N2E2_1155 0.72 +1.2
1,353,421 - Pf6N2E2_1155 0.72 +0.3
1,353,889 + Pf6N2E2_1156 0.40 -1.1
1,353,890 - Pf6N2E2_1156 0.40 -0.8
1,353,890 - Pf6N2E2_1156 0.40 -2.9
1,354,003 + Pf6N2E2_1156 0.61 -0.5
1,354,130 + Pf6N2E2_1156 0.85 -0.6
1,354,130 + Pf6N2E2_1156 0.85 +0.1
1,354,180 + -0.5
1,354,180 + -1.8
1,354,180 + +0.7
1,354,181 - -0.2
1,354,253 - -1.4
1,354,270 - -2.0
1,354,350 + Pf6N2E2_1157 0.12 -0.2
1,354,350 + Pf6N2E2_1157 0.12 +0.2
1,354,408 + Pf6N2E2_1157 0.20 +0.7
1,354,461 + Pf6N2E2_1157 0.27 +1.2
1,354,762 + Pf6N2E2_1157 0.65 -0.0
1,354,779 + Pf6N2E2_1157 0.67 +0.8
1,354,780 - Pf6N2E2_1157 0.67 +0.4
1,354,973 - -0.3
1,355,109 + +0.8
1,355,109 + +0.0
1,355,130 - -0.3

Or see this region's nucleotide sequence