Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1155 and Pf6N2E2_1156 overlap by 29 nucleotides Pf6N2E2_1156 and Pf6N2E2_1157 are separated by 39 nucleotides Pf6N2E2_1157 and Pf6N2E2_1158 are separated by 92 nucleotides
Pf6N2E2_1155 - Cyn operon transcriptional activator, at 1,352,699 to 1,353,706
_1155
Pf6N2E2_1156 - hypothetical protein, at 1,353,678 to 1,354,211
_1156
Pf6N2E2_1157 - hypothetical protein possibly connected to lactam utilization and allophanate hydrolase, at 1,354,251 to 1,355,042
_1157
Pf6N2E2_1158 - Cyn operon transcriptional activator, at 1,355,135 to 1,356,082
_1158
Position (kb)
1353
1354
1355 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1353.053 kb on + strand, within Pf6N2E2_1155 at 1353.087 kb on + strand, within Pf6N2E2_1155 at 1353.088 kb on - strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.158 kb on + strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.159 kb on - strand, within Pf6N2E2_1155 at 1353.420 kb on + strand, within Pf6N2E2_1155 at 1353.421 kb on - strand, within Pf6N2E2_1155 at 1353.889 kb on + strand, within Pf6N2E2_1156 at 1353.890 kb on - strand, within Pf6N2E2_1156 at 1353.890 kb on - strand, within Pf6N2E2_1156 at 1354.003 kb on + strand, within Pf6N2E2_1156 at 1354.130 kb on + strand, within Pf6N2E2_1156 at 1354.130 kb on + strand, within Pf6N2E2_1156 at 1354.180 kb on + strand at 1354.180 kb on + strand at 1354.180 kb on + strand at 1354.181 kb on - strand at 1354.253 kb on - strand at 1354.270 kb on - strand at 1354.350 kb on + strand, within Pf6N2E2_1157 at 1354.350 kb on + strand, within Pf6N2E2_1157 at 1354.408 kb on + strand, within Pf6N2E2_1157 at 1354.461 kb on + strand, within Pf6N2E2_1157 at 1354.762 kb on + strand, within Pf6N2E2_1157 at 1354.779 kb on + strand, within Pf6N2E2_1157 at 1354.780 kb on - strand, within Pf6N2E2_1157 at 1354.973 kb on - strand at 1355.109 kb on + strand at 1355.109 kb on + strand at 1355.130 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 1,353,053 + Pf6N2E2_1155 0.35 +0.9 1,353,087 + Pf6N2E2_1155 0.38 -1.0 1,353,088 - Pf6N2E2_1155 0.39 +1.1 1,353,158 + Pf6N2E2_1155 0.46 +0.4 1,353,158 + Pf6N2E2_1155 0.46 +0.2 1,353,158 + Pf6N2E2_1155 0.46 -0.3 1,353,158 + Pf6N2E2_1155 0.46 +1.4 1,353,159 - Pf6N2E2_1155 0.46 -2.2 1,353,159 - Pf6N2E2_1155 0.46 +1.1 1,353,159 - Pf6N2E2_1155 0.46 +1.3 1,353,159 - Pf6N2E2_1155 0.46 +1.3 1,353,159 - Pf6N2E2_1155 0.46 -0.6 1,353,420 + Pf6N2E2_1155 0.72 +1.2 1,353,421 - Pf6N2E2_1155 0.72 +0.3 1,353,889 + Pf6N2E2_1156 0.40 -1.1 1,353,890 - Pf6N2E2_1156 0.40 -0.8 1,353,890 - Pf6N2E2_1156 0.40 -2.9 1,354,003 + Pf6N2E2_1156 0.61 -0.5 1,354,130 + Pf6N2E2_1156 0.85 -0.6 1,354,130 + Pf6N2E2_1156 0.85 +0.1 1,354,180 + -0.5 1,354,180 + -1.8 1,354,180 + +0.7 1,354,181 - -0.2 1,354,253 - -1.4 1,354,270 - -2.0 1,354,350 + Pf6N2E2_1157 0.12 -0.2 1,354,350 + Pf6N2E2_1157 0.12 +0.2 1,354,408 + Pf6N2E2_1157 0.20 +0.7 1,354,461 + Pf6N2E2_1157 0.27 +1.2 1,354,762 + Pf6N2E2_1157 0.65 -0.0 1,354,779 + Pf6N2E2_1157 0.67 +0.8 1,354,780 - Pf6N2E2_1157 0.67 +0.4 1,354,973 - -0.3 1,355,109 + +0.8 1,355,109 + +0.0 1,355,130 - -0.3
Or see this region's nucleotide sequence