Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23805 and BWI76_RS23810 are separated by 5 nucleotides BWI76_RS23810 and BWI76_RS23815 are separated by 22 nucleotides BWI76_RS23815 and BWI76_RS23820 are separated by 121 nucleotides BWI76_RS23820 and BWI76_RS23825 are separated by 8 nucleotides
BWI76_RS23805: BWI76_RS23805 - ssDNA exonuclease RecJ, at 4,969,297 to 4,971,030
_RS23805
BWI76_RS23810: BWI76_RS23810 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 4,971,036 to 4,971,749
_RS23810
BWI76_RS23815: BWI76_RS23815 - site-specific tyrosine recombinase XerD, at 4,971,772 to 4,972,668
_RS23815
BWI76_RS23820: BWI76_RS23820 - flavodoxin FldB, at 4,972,790 to 4,973,311
_RS23820
BWI76_RS23825: BWI76_RS23825 - hypothetical protein, at 4,973,320 to 4,973,730
_RS23825
Position (kb) 4971
4972
4973 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4970.820 kb on - strand, within BWI76_RS23805 at 4970.866 kb on + strand at 4970.879 kb on - strand at 4970.879 kb on - strand at 4971.158 kb on + strand, within BWI76_RS23810 at 4971.385 kb on - strand, within BWI76_RS23810 at 4971.469 kb on + strand at 4971.702 kb on + strand at 4971.711 kb on - strand at 4971.838 kb on - strand at 4971.856 kb on + strand at 4971.972 kb on + strand, within BWI76_RS23815 at 4972.185 kb on + strand, within BWI76_RS23815 at 4972.742 kb on + strand at 4972.866 kb on + strand, within BWI76_RS23820 at 4973.138 kb on + strand, within BWI76_RS23820 at 4973.139 kb on + strand, within BWI76_RS23820 at 4973.508 kb on + strand, within BWI76_RS23825 at 4973.516 kb on - strand, within BWI76_RS23825 at 4973.573 kb on + strand, within BWI76_RS23825 at 4973.581 kb on - strand, within BWI76_RS23825 at 4973.602 kb on + strand, within BWI76_RS23825 at 4973.606 kb on - strand, within BWI76_RS23825 at 4973.613 kb on + strand, within BWI76_RS23825 at 4973.623 kb on - strand, within BWI76_RS23825 at 4973.635 kb on - strand, within BWI76_RS23825
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 4,970,820 - BWI76_RS23805 0.88 -0.2 4,970,866 + +0.8 4,970,879 - +0.1 4,970,879 - -0.1 4,971,158 + BWI76_RS23810 0.17 -0.9 4,971,385 - BWI76_RS23810 0.49 -1.5 4,971,469 + +1.6 4,971,702 + +0.1 4,971,711 - -2.5 4,971,838 - -1.5 4,971,856 + -1.6 4,971,972 + BWI76_RS23815 0.22 -0.6 4,972,185 + BWI76_RS23815 0.46 +3.5 4,972,742 + -0.4 4,972,866 + BWI76_RS23820 0.15 -0.4 4,973,138 + BWI76_RS23820 0.67 -0.5 4,973,139 + BWI76_RS23820 0.67 -0.6 4,973,508 + BWI76_RS23825 0.46 -2.0 4,973,516 - BWI76_RS23825 0.48 -1.5 4,973,573 + BWI76_RS23825 0.62 -0.9 4,973,581 - BWI76_RS23825 0.64 -1.8 4,973,602 + BWI76_RS23825 0.69 +0.0 4,973,606 - BWI76_RS23825 0.70 -1.0 4,973,613 + BWI76_RS23825 0.71 -1.5 4,973,623 - BWI76_RS23825 0.74 -1.3 4,973,635 - BWI76_RS23825 0.77 -1.3
Or see this region's nucleotide sequence