Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22885 and BWI76_RS22890 are separated by 163 nucleotides BWI76_RS22890 and BWI76_RS22895 are separated by 73 nucleotides
BWI76_RS22885: BWI76_RS22885 - aliphatic sulfonate ABC transporter substrate-binding protein, at 4,775,638 to 4,776,579
_RS22885
BWI76_RS22890: BWI76_RS22890 - 5,10-methylenetetrahydromethanopterin reductase, at 4,776,743 to 4,778,149
_RS22890
BWI76_RS22895: BWI76_RS22895 - FAD-dependent oxidoreductase, at 4,778,223 to 4,779,620
_RS22895
Position (kb) 4776
4777
4778
4779 Strain fitness (log2 ratio) -2
-1
0
1 at 4775.824 kb on - strand, within BWI76_RS22885 at 4775.934 kb on - strand, within BWI76_RS22885 at 4775.944 kb on - strand, within BWI76_RS22885 at 4776.081 kb on + strand, within BWI76_RS22885 at 4776.086 kb on + strand, within BWI76_RS22885 at 4776.117 kb on + strand, within BWI76_RS22885 at 4776.171 kb on + strand, within BWI76_RS22885 at 4776.249 kb on - strand, within BWI76_RS22885 at 4776.256 kb on - strand, within BWI76_RS22885 at 4776.266 kb on + strand, within BWI76_RS22885 at 4776.266 kb on - strand, within BWI76_RS22885 at 4776.266 kb on - strand, within BWI76_RS22885 at 4776.267 kb on - strand, within BWI76_RS22885 at 4776.459 kb on + strand, within BWI76_RS22885 at 4776.551 kb on + strand at 4776.573 kb on + strand at 4776.987 kb on + strand, within BWI76_RS22890 at 4776.987 kb on + strand, within BWI76_RS22890 at 4777.188 kb on - strand, within BWI76_RS22890 at 4777.243 kb on - strand, within BWI76_RS22890 at 4777.487 kb on - strand, within BWI76_RS22890 at 4777.569 kb on + strand, within BWI76_RS22890 at 4777.974 kb on + strand, within BWI76_RS22890 at 4778.050 kb on + strand at 4778.081 kb on - strand at 4778.081 kb on - strand at 4778.154 kb on - strand at 4778.154 kb on - strand at 4778.257 kb on - strand at 4778.644 kb on + strand, within BWI76_RS22895 at 4778.658 kb on - strand, within BWI76_RS22895 at 4778.715 kb on - strand, within BWI76_RS22895 at 4778.925 kb on - strand, within BWI76_RS22895 at 4778.925 kb on - strand, within BWI76_RS22895 at 4778.985 kb on - strand, within BWI76_RS22895 at 4779.074 kb on - strand, within BWI76_RS22895 at 4779.079 kb on + strand, within BWI76_RS22895
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM remove 4,775,824 - BWI76_RS22885 0.20 +0.0 4,775,934 - BWI76_RS22885 0.31 -0.2 4,775,944 - BWI76_RS22885 0.32 -0.8 4,776,081 + BWI76_RS22885 0.47 +1.0 4,776,086 + BWI76_RS22885 0.48 -1.9 4,776,117 + BWI76_RS22885 0.51 +0.0 4,776,171 + BWI76_RS22885 0.57 -0.3 4,776,249 - BWI76_RS22885 0.65 +0.1 4,776,256 - BWI76_RS22885 0.66 +0.7 4,776,266 + BWI76_RS22885 0.67 -0.0 4,776,266 - BWI76_RS22885 0.67 +0.6 4,776,266 - BWI76_RS22885 0.67 +0.9 4,776,267 - BWI76_RS22885 0.67 -0.2 4,776,459 + BWI76_RS22885 0.87 +0.2 4,776,551 + -0.4 4,776,573 + -0.3 4,776,987 + BWI76_RS22890 0.17 -0.2 4,776,987 + BWI76_RS22890 0.17 -0.2 4,777,188 - BWI76_RS22890 0.32 -0.8 4,777,243 - BWI76_RS22890 0.36 -0.7 4,777,487 - BWI76_RS22890 0.53 -0.7 4,777,569 + BWI76_RS22890 0.59 -1.3 4,777,974 + BWI76_RS22890 0.87 -1.2 4,778,050 + +0.1 4,778,081 - -1.1 4,778,081 - +0.2 4,778,154 - +0.4 4,778,154 - -1.1 4,778,257 - -0.7 4,778,644 + BWI76_RS22895 0.30 -0.0 4,778,658 - BWI76_RS22895 0.31 -0.1 4,778,715 - BWI76_RS22895 0.35 -0.4 4,778,925 - BWI76_RS22895 0.50 -0.4 4,778,925 - BWI76_RS22895 0.50 +0.3 4,778,985 - BWI76_RS22895 0.55 +0.2 4,779,074 - BWI76_RS22895 0.61 -0.1 4,779,079 + BWI76_RS22895 0.61 +0.0
Or see this region's nucleotide sequence