Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0521
Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
595,289 | + | DVU0520 | 0.42 | +1.8 | |
595,289 | + | DVU0520 | 0.42 | +0.8 | |
595,292 | + | DVU0520 | 0.43 | +0.8 | |
595,301 | + | DVU0520 | 0.43 | +1.3 | |
595,303 | - | DVU0520 | 0.43 | +1.3 | |
595,337 | - | DVU0520 | 0.45 | +1.1 | |
595,357 | - | DVU0520 | 0.47 | +1.0 | |
595,389 | + | DVU0520 | 0.49 | +0.8 | |
595,396 | + | DVU0520 | 0.49 | +0.9 | |
595,466 | + | DVU0520 | 0.54 | +1.4 | |
595,476 | - | DVU0520 | 0.54 | +1.1 | |
595,510 | - | DVU0520 | 0.56 | +0.9 | |
595,564 | + | DVU0520 | 0.60 | +0.9 | |
595,622 | + | DVU0520 | 0.64 | +1.0 | |
595,699 | + | DVU0520 | 0.69 | +0.5 | |
595,739 | + | DVU0520 | 0.71 | +0.5 | |
595,796 | - | DVU0520 | 0.75 | +1.2 | |
595,802 | - | DVU0520 | 0.75 | +1.1 | |
595,826 | - | DVU0520 | 0.77 | -0.3 | |
595,864 | + | DVU0520 | 0.79 | +0.6 | |
595,920 | + | DVU0520 | 0.83 | +1.7 | |
595,935 | - | DVU0520 | 0.84 | -0.2 | |
595,935 | - | DVU0520 | 0.84 | +2.8 | |
596,027 | - | DVU0520 | 0.89 | +1.7 | |
596,029 | - | DVU0520 | 0.90 | +1.1 | |
596,106 | - | +0.8 | |||
596,128 | + | +0.6 | |||
596,187 | + | -0.4 | |||
596,228 | - | -0.6 | |||
596,285 | - | csrA | DVU0521 | 0.33 | -1.0 |
596,353 | - | csrA | DVU0521 | 0.62 | -1.0 |
596,394 | + | csrA | DVU0521 | 0.79 | +0.9 |
596,397 | - | csrA | DVU0521 | 0.80 | +0.0 |
596,469 | + | +0.1 | |||
596,486 | + | yviF | DVU0522 | 0.12 | +1.6 |
596,507 | + | yviF | DVU0522 | 0.16 | +0.6 |
596,610 | + | yviF | DVU0522 | 0.36 | +1.2 |
596,686 | + | yviF | DVU0522 | 0.51 | +1.7 |
596,694 | + | yviF | DVU0522 | 0.52 | +1.1 |
596,756 | + | yviF | DVU0522 | 0.64 | +1.8 |
596,771 | + | yviF | DVU0522 | 0.67 | +1.9 |
596,938 | + | -1.2 | |||
596,938 | + | -0.2 | |||
597,143 | - | -0.1 | |||
597,164 | - | -0.0 | |||
597,259 | + | +0.1 | |||
597,267 | - | +0.8 | |||
597,327 | - | flgM | DVU0523 | 0.10 | -1.3 |
597,436 | + | flgM | DVU0523 | 0.45 | -0.4 |
Or see this region's nucleotide sequence