Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgI and DVU0517 are separated by 1 nucleotides DVU0517 and DVU0518 are separated by 23 nucleotides DVU0518 and DVU0519 overlap by 1 nucleotides
DVU0516: flgI - flagellar P-ring protein FlgI (TIGR), at 589,056 to 590,192
flgI
DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026
DVU0517
DVU0518: DVU0518 - hypothetical protein (TIGR), at 592,050 to 592,514
DVU0518
DVU0519: DVU0519 - flagellar hook-associated protein FlgK, putative (TIGR), at 592,514 to 594,610
DVU0519
Position (kb) 590
591
592
593 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.195 kb on - strand, within flgI at 589.209 kb on - strand, within flgI at 589.289 kb on + strand, within flgI at 589.332 kb on - strand, within flgI at 589.406 kb on + strand, within flgI at 589.446 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.481 kb on - strand, within flgI at 589.483 kb on - strand, within flgI at 589.641 kb on + strand, within flgI at 589.670 kb on - strand, within flgI at 589.672 kb on + strand, within flgI at 589.717 kb on - strand, within flgI at 589.717 kb on - strand, within flgI at 589.744 kb on - strand, within flgI at 589.826 kb on - strand, within flgI at 589.853 kb on - strand, within flgI at 589.894 kb on + strand, within flgI at 590.137 kb on - strand at 590.195 kb on + strand at 590.270 kb on + strand at 590.279 kb on + strand at 590.407 kb on + strand, within DVU0517 at 590.417 kb on + strand, within DVU0517 at 590.420 kb on - strand, within DVU0517 at 590.425 kb on + strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.458 kb on - strand, within DVU0517 at 590.540 kb on - strand, within DVU0517 at 590.547 kb on + strand, within DVU0517 at 590.560 kb on - strand, within DVU0517 at 590.676 kb on + strand, within DVU0517 at 590.685 kb on - strand, within DVU0517 at 590.751 kb on - strand, within DVU0517 at 590.760 kb on + strand, within DVU0517 at 590.866 kb on + strand, within DVU0517 at 590.899 kb on + strand, within DVU0517 at 590.914 kb on + strand, within DVU0517 at 590.922 kb on - strand, within DVU0517 at 590.981 kb on + strand, within DVU0517 at 590.988 kb on + strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 591.301 kb on + strand, within DVU0517 at 591.335 kb on - strand, within DVU0517 at 591.344 kb on + strand, within DVU0517 at 591.400 kb on - strand, within DVU0517 at 591.461 kb on - strand, within DVU0517 at 591.461 kb on - strand, within DVU0517 at 591.493 kb on - strand, within DVU0517 at 591.561 kb on - strand, within DVU0517 at 592.036 kb on + strand at 592.050 kb on + strand at 592.050 kb on + strand at 592.091 kb on + strand at 592.091 kb on + strand at 592.099 kb on - strand, within DVU0518 at 592.099 kb on - strand, within DVU0518 at 592.176 kb on - strand, within DVU0518 at 592.231 kb on - strand, within DVU0518 at 592.251 kb on + strand, within DVU0518 at 592.281 kb on + strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.289 kb on - strand, within DVU0518 at 592.306 kb on - strand, within DVU0518 at 592.329 kb on + strand, within DVU0518 at 592.334 kb on + strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.337 kb on - strand, within DVU0518 at 592.342 kb on - strand, within DVU0518 at 592.363 kb on - strand, within DVU0518 at 592.372 kb on + strand, within DVU0518 at 592.376 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.433 kb on + strand, within DVU0518 at 592.539 kb on - strand at 592.539 kb on - strand at 592.574 kb on + strand at 592.639 kb on - strand at 592.791 kb on - strand, within DVU0519 at 592.847 kb on + strand, within DVU0519 at 592.950 kb on - strand, within DVU0519 at 592.968 kb on + strand, within DVU0519
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 589,195 - flgI DVU0516 0.12 -1.0 589,209 - flgI DVU0516 0.13 +0.5 589,289 + flgI DVU0516 0.20 +1.5 589,332 - flgI DVU0516 0.24 +1.0 589,406 + flgI DVU0516 0.31 +1.5 589,446 + flgI DVU0516 0.34 +1.2 589,475 + flgI DVU0516 0.37 +1.6 589,475 + flgI DVU0516 0.37 +1.5 589,475 + flgI DVU0516 0.37 +1.9 589,481 - flgI DVU0516 0.37 -0.2 589,483 - flgI DVU0516 0.38 +1.2 589,641 + flgI DVU0516 0.51 +1.5 589,670 - flgI DVU0516 0.54 +1.1 589,672 + flgI DVU0516 0.54 +1.5 589,717 - flgI DVU0516 0.58 +1.2 589,717 - flgI DVU0516 0.58 +1.3 589,744 - flgI DVU0516 0.61 +1.5 589,826 - flgI DVU0516 0.68 +1.5 589,853 - flgI DVU0516 0.70 +1.4 589,894 + flgI DVU0516 0.74 +2.3 590,137 - +1.4 590,195 + +0.6 590,270 + +1.3 590,279 + +1.5 590,407 + DVU0517 0.12 +1.6 590,417 + DVU0517 0.12 +1.4 590,420 - DVU0517 0.12 +1.3 590,425 + DVU0517 0.13 +2.6 590,425 - DVU0517 0.13 +1.1 590,425 - DVU0517 0.13 +0.7 590,458 - DVU0517 0.14 +1.5 590,540 - DVU0517 0.19 -0.2 590,547 + DVU0517 0.19 -0.1 590,560 - DVU0517 0.20 +0.3 590,676 + DVU0517 0.26 +0.1 590,685 - DVU0517 0.27 +0.0 590,751 - DVU0517 0.30 -0.1 590,760 + DVU0517 0.31 -0.1 590,866 + DVU0517 0.37 -0.5 590,899 + DVU0517 0.38 -0.5 590,914 + DVU0517 0.39 +0.1 590,922 - DVU0517 0.40 +0.9 590,981 + DVU0517 0.43 +1.9 590,988 + DVU0517 0.43 -0.5 590,991 - DVU0517 0.43 -0.1 590,991 - DVU0517 0.43 +0.2 591,301 + DVU0517 0.60 +0.3 591,335 - DVU0517 0.62 +0.0 591,344 + DVU0517 0.63 -2.2 591,400 - DVU0517 0.66 +0.4 591,461 - DVU0517 0.69 -0.6 591,461 - DVU0517 0.69 +0.2 591,493 - DVU0517 0.71 -0.3 591,561 - DVU0517 0.75 +0.0 592,036 + -0.8 592,050 + -0.1 592,050 + +0.5 592,091 + +1.3 592,091 + +0.5 592,099 - DVU0518 0.11 -0.1 592,099 - DVU0518 0.11 +1.1 592,176 - DVU0518 0.27 +1.5 592,231 - DVU0518 0.39 +1.2 592,251 + DVU0518 0.43 +1.9 592,281 + DVU0518 0.50 +1.1 592,289 - DVU0518 0.51 +1.3 592,289 - DVU0518 0.51 +0.7 592,289 - DVU0518 0.51 +0.9 592,306 - DVU0518 0.55 +1.0 592,329 + DVU0518 0.60 +1.1 592,334 + DVU0518 0.61 +0.8 592,337 - DVU0518 0.62 +1.3 592,337 - DVU0518 0.62 +0.6 592,342 - DVU0518 0.63 +1.1 592,363 - DVU0518 0.67 -0.9 592,372 + DVU0518 0.69 +1.4 592,376 + DVU0518 0.70 +0.8 592,433 + DVU0518 0.82 +1.3 592,433 + DVU0518 0.82 +1.2 592,539 - +1.1 592,539 - +1.4 592,574 + +1.0 592,639 - +0.6 592,791 - DVU0519 0.13 +1.8 592,847 + DVU0519 0.16 +1.8 592,950 - DVU0519 0.21 +1.4 592,968 + DVU0519 0.22 +1.5
Or see this region's nucleotide sequence