Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0514 and flgH are separated by 18 nucleotides flgH and flgI are separated by 9 nucleotides flgI and DVU0517 are separated by 1 nucleotides
DVU0514: DVU0514 - FlgA family protein (TIGR), at 587,379 to 588,311
DVU0514
DVU0515: flgH - flagellar L-ring protein FlgH (TIGR), at 588,330 to 589,046
flgH
DVU0516: flgI - flagellar P-ring protein FlgI (TIGR), at 589,056 to 590,192
flgI
DVU0517: DVU0517 - peptidase, M23/M37 family (TIGR), at 590,194 to 592,026
DVU0517
Position (kb) 589
590
591 Strain fitness (log2 ratio) -1
0
1
2 at 588.093 kb on + strand, within DVU0514 at 588.170 kb on - strand, within DVU0514 at 588.185 kb on - strand, within DVU0514 at 588.185 kb on - strand, within DVU0514 at 588.240 kb on - strand at 588.264 kb on - strand at 588.275 kb on - strand at 588.302 kb on + strand at 588.310 kb on - strand at 588.329 kb on - strand at 588.345 kb on - strand at 588.363 kb on + strand at 588.363 kb on + strand at 588.368 kb on + strand at 588.368 kb on + strand at 588.371 kb on - strand at 588.371 kb on - strand at 588.371 kb on - strand at 588.376 kb on - strand at 588.380 kb on + strand at 588.380 kb on + strand at 588.429 kb on + strand, within flgH at 588.444 kb on - strand, within flgH at 588.547 kb on - strand, within flgH at 588.556 kb on - strand, within flgH at 588.566 kb on + strand, within flgH at 588.580 kb on - strand, within flgH at 588.617 kb on + strand, within flgH at 588.620 kb on - strand, within flgH at 588.625 kb on - strand, within flgH at 588.625 kb on - strand, within flgH at 588.642 kb on + strand, within flgH at 588.642 kb on + strand, within flgH at 588.645 kb on - strand, within flgH at 588.682 kb on - strand, within flgH at 588.699 kb on + strand, within flgH at 588.752 kb on + strand, within flgH at 588.760 kb on - strand, within flgH at 588.841 kb on - strand, within flgH at 588.857 kb on + strand, within flgH at 588.870 kb on + strand, within flgH at 588.890 kb on - strand, within flgH at 588.892 kb on + strand, within flgH at 588.900 kb on - strand, within flgH at 588.917 kb on - strand, within flgH at 588.963 kb on + strand, within flgH at 589.031 kb on + strand at 589.121 kb on + strand at 589.195 kb on - strand, within flgI at 589.209 kb on - strand, within flgI at 589.289 kb on + strand, within flgI at 589.332 kb on - strand, within flgI at 589.406 kb on + strand, within flgI at 589.446 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.475 kb on + strand, within flgI at 589.481 kb on - strand, within flgI at 589.483 kb on - strand, within flgI at 589.641 kb on + strand, within flgI at 589.670 kb on - strand, within flgI at 589.672 kb on + strand, within flgI at 589.717 kb on - strand, within flgI at 589.717 kb on - strand, within flgI at 589.744 kb on - strand, within flgI at 589.826 kb on - strand, within flgI at 589.853 kb on - strand, within flgI at 589.894 kb on + strand, within flgI at 590.137 kb on - strand at 590.195 kb on + strand at 590.270 kb on + strand at 590.279 kb on + strand at 590.407 kb on + strand, within DVU0517 at 590.417 kb on + strand, within DVU0517 at 590.420 kb on - strand, within DVU0517 at 590.425 kb on + strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.425 kb on - strand, within DVU0517 at 590.458 kb on - strand, within DVU0517 at 590.540 kb on - strand, within DVU0517 at 590.547 kb on + strand, within DVU0517 at 590.560 kb on - strand, within DVU0517 at 590.676 kb on + strand, within DVU0517 at 590.685 kb on - strand, within DVU0517 at 590.751 kb on - strand, within DVU0517 at 590.760 kb on + strand, within DVU0517 at 590.866 kb on + strand, within DVU0517 at 590.899 kb on + strand, within DVU0517 at 590.914 kb on + strand, within DVU0517 at 590.922 kb on - strand, within DVU0517 at 590.981 kb on + strand, within DVU0517 at 590.988 kb on + strand, within DVU0517 at 590.991 kb on - strand, within DVU0517 at 590.991 kb on - strand, within DVU0517
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 588,093 + DVU0514 0.77 +1.0 588,170 - DVU0514 0.85 +0.8 588,185 - DVU0514 0.86 +1.4 588,185 - DVU0514 0.86 +1.6 588,240 - +1.3 588,264 - +1.7 588,275 - +1.6 588,302 + +0.7 588,310 - +2.4 588,329 - +0.1 588,345 - -0.3 588,363 + +1.4 588,363 + +1.2 588,368 + +1.3 588,368 + +1.4 588,371 - +1.6 588,371 - +1.5 588,371 - +1.1 588,376 - +1.3 588,380 + +1.1 588,380 + +1.0 588,429 + flgH DVU0515 0.14 +1.0 588,444 - flgH DVU0515 0.16 +1.3 588,547 - flgH DVU0515 0.30 +1.6 588,556 - flgH DVU0515 0.32 +1.5 588,566 + flgH DVU0515 0.33 +1.1 588,580 - flgH DVU0515 0.35 -0.1 588,617 + flgH DVU0515 0.40 +1.8 588,620 - flgH DVU0515 0.40 -0.9 588,625 - flgH DVU0515 0.41 -0.0 588,625 - flgH DVU0515 0.41 +0.5 588,642 + flgH DVU0515 0.44 +1.4 588,642 + flgH DVU0515 0.44 +1.3 588,645 - flgH DVU0515 0.44 -0.6 588,682 - flgH DVU0515 0.49 +1.1 588,699 + flgH DVU0515 0.51 +1.8 588,752 + flgH DVU0515 0.59 +0.9 588,760 - flgH DVU0515 0.60 +1.6 588,841 - flgH DVU0515 0.71 +0.1 588,857 + flgH DVU0515 0.74 +1.3 588,870 + flgH DVU0515 0.75 +1.4 588,890 - flgH DVU0515 0.78 +1.4 588,892 + flgH DVU0515 0.78 +0.9 588,900 - flgH DVU0515 0.79 +1.2 588,917 - flgH DVU0515 0.82 +1.4 588,963 + flgH DVU0515 0.88 +1.2 589,031 + +0.4 589,121 + +1.7 589,195 - flgI DVU0516 0.12 -1.0 589,209 - flgI DVU0516 0.13 +0.5 589,289 + flgI DVU0516 0.20 +1.5 589,332 - flgI DVU0516 0.24 +1.0 589,406 + flgI DVU0516 0.31 +1.5 589,446 + flgI DVU0516 0.34 +1.2 589,475 + flgI DVU0516 0.37 +1.6 589,475 + flgI DVU0516 0.37 +1.5 589,475 + flgI DVU0516 0.37 +1.9 589,481 - flgI DVU0516 0.37 -0.2 589,483 - flgI DVU0516 0.38 +1.2 589,641 + flgI DVU0516 0.51 +1.5 589,670 - flgI DVU0516 0.54 +1.1 589,672 + flgI DVU0516 0.54 +1.5 589,717 - flgI DVU0516 0.58 +1.2 589,717 - flgI DVU0516 0.58 +1.3 589,744 - flgI DVU0516 0.61 +1.5 589,826 - flgI DVU0516 0.68 +1.5 589,853 - flgI DVU0516 0.70 +1.4 589,894 + flgI DVU0516 0.74 +2.3 590,137 - +1.4 590,195 + +0.6 590,270 + +1.3 590,279 + +1.5 590,407 + DVU0517 0.12 +1.6 590,417 + DVU0517 0.12 +1.4 590,420 - DVU0517 0.12 +1.3 590,425 + DVU0517 0.13 +2.6 590,425 - DVU0517 0.13 +1.1 590,425 - DVU0517 0.13 +0.7 590,458 - DVU0517 0.14 +1.5 590,540 - DVU0517 0.19 -0.2 590,547 + DVU0517 0.19 -0.1 590,560 - DVU0517 0.20 +0.3 590,676 + DVU0517 0.26 +0.1 590,685 - DVU0517 0.27 +0.0 590,751 - DVU0517 0.30 -0.1 590,760 + DVU0517 0.31 -0.1 590,866 + DVU0517 0.37 -0.5 590,899 + DVU0517 0.38 -0.5 590,914 + DVU0517 0.39 +0.1 590,922 - DVU0517 0.40 +0.9 590,981 + DVU0517 0.43 +1.9 590,988 + DVU0517 0.43 -0.5 590,991 - DVU0517 0.43 -0.1 590,991 - DVU0517 0.43 +0.2
Or see this region's nucleotide sequence