Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroE and DVU0116 are separated by 338 nucleotides DVU0116 and DVU0117 are separated by 47 nucleotides
DVU0115: aroE - shikimate 5-dehydrogenase (TIGR), at 148,475 to 149,380
aroE
DVU0116: DVU0116 - polysaccharide deacetylase family protein (TIGR), at 149,719 to 150,795
DVU0116
DVU0117: DVU0117 - glycosyl transferase, group 2 family protein (TIGR), at 150,843 to 151,760
DVU0117
Position (kb) 149
150
151 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 149.321 kb on + strand at 149.321 kb on + strand at 149.321 kb on + strand at 149.322 kb on + strand at 149.324 kb on - strand at 149.329 kb on - strand at 149.374 kb on - strand at 149.375 kb on - strand at 149.389 kb on + strand at 149.436 kb on + strand at 149.436 kb on + strand at 149.499 kb on - strand at 149.535 kb on + strand at 149.563 kb on + strand at 149.571 kb on - strand at 149.595 kb on + strand at 149.608 kb on + strand at 149.637 kb on + strand at 149.676 kb on + strand at 149.821 kb on + strand at 149.892 kb on - strand, within DVU0116 at 149.901 kb on + strand, within DVU0116 at 149.918 kb on + strand, within DVU0116 at 149.966 kb on - strand, within DVU0116 at 150.035 kb on + strand, within DVU0116 at 150.195 kb on + strand, within DVU0116 at 150.195 kb on + strand, within DVU0116 at 150.195 kb on + strand, within DVU0116 at 150.195 kb on + strand, within DVU0116 at 150.196 kb on + strand, within DVU0116 at 150.197 kb on + strand, within DVU0116 at 150.203 kb on - strand, within DVU0116 at 150.217 kb on - strand, within DVU0116 at 150.219 kb on - strand, within DVU0116 at 150.248 kb on + strand, within DVU0116 at 150.410 kb on - strand, within DVU0116 at 150.529 kb on - strand, within DVU0116 at 150.534 kb on - strand, within DVU0116 at 150.544 kb on + strand, within DVU0116 at 150.567 kb on + strand, within DVU0116 at 150.718 kb on + strand at 150.726 kb on - strand at 150.742 kb on - strand at 150.815 kb on - strand at 150.997 kb on - strand, within DVU0117 at 150.997 kb on - strand, within DVU0117 at 151.091 kb on - strand, within DVU0117 at 151.099 kb on + strand, within DVU0117 at 151.184 kb on - strand, within DVU0117 at 151.310 kb on + strand, within DVU0117 at 151.407 kb on + strand, within DVU0117 at 151.425 kb on - strand, within DVU0117 at 151.436 kb on - strand, within DVU0117 at 151.436 kb on - strand, within DVU0117 at 151.436 kb on - strand, within DVU0117 at 151.475 kb on + strand, within DVU0117 at 151.478 kb on - strand, within DVU0117 at 151.517 kb on - strand, within DVU0117 at 151.522 kb on - strand, within DVU0117 at 151.591 kb on - strand, within DVU0117 at 151.674 kb on + strand at 151.674 kb on + strand at 151.682 kb on - strand at 151.682 kb on - strand at 151.682 kb on - strand at 151.682 kb on - strand at 151.781 kb on - strand at 151.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 149,321 + -2.6 149,321 + -2.0 149,321 + -4.0 149,322 + -1.8 149,324 - -1.8 149,329 - -3.1 149,374 - -0.0 149,375 - -1.4 149,389 + +0.1 149,436 + +0.3 149,436 + -0.6 149,499 - -0.2 149,535 + -0.7 149,563 + +1.6 149,571 - +0.2 149,595 + -1.2 149,608 + +0.0 149,637 + +0.7 149,676 + -0.1 149,821 + +0.3 149,892 - DVU0116 0.16 +0.6 149,901 + DVU0116 0.17 -0.4 149,918 + DVU0116 0.18 +0.4 149,966 - DVU0116 0.23 +0.0 150,035 + DVU0116 0.29 +0.6 150,195 + DVU0116 0.44 -0.3 150,195 + DVU0116 0.44 +0.9 150,195 + DVU0116 0.44 +1.3 150,195 + DVU0116 0.44 +0.9 150,196 + DVU0116 0.44 +0.0 150,197 + DVU0116 0.44 +0.0 150,203 - DVU0116 0.45 -1.1 150,217 - DVU0116 0.46 +0.2 150,219 - DVU0116 0.46 -0.0 150,248 + DVU0116 0.49 +0.4 150,410 - DVU0116 0.64 -0.5 150,529 - DVU0116 0.75 +0.4 150,534 - DVU0116 0.76 -0.0 150,544 + DVU0116 0.77 -0.3 150,567 + DVU0116 0.79 +0.6 150,718 + -0.1 150,726 - +0.6 150,742 - +0.3 150,815 - -0.0 150,997 - DVU0117 0.17 -1.0 150,997 - DVU0117 0.17 +1.3 151,091 - DVU0117 0.27 +0.2 151,099 + DVU0117 0.28 +0.4 151,184 - DVU0117 0.37 -0.3 151,310 + DVU0117 0.51 +0.7 151,407 + DVU0117 0.61 +0.3 151,425 - DVU0117 0.63 +0.6 151,436 - DVU0117 0.65 -0.8 151,436 - DVU0117 0.65 +1.0 151,436 - DVU0117 0.65 -0.5 151,475 + DVU0117 0.69 +0.3 151,478 - DVU0117 0.69 +0.6 151,517 - DVU0117 0.73 -0.1 151,522 - DVU0117 0.74 +0.0 151,591 - DVU0117 0.81 +0.9 151,674 + -0.1 151,674 + +0.4 151,682 - -0.1 151,682 - -0.5 151,682 - +0.4 151,682 - +1.4 151,781 - -1.1 151,788 + -0.6
Or see this region's nucleotide sequence