Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3006

Experiment: Formate/Acetate-Sulfate (60/30-60 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/30-60 mM)
3,117,315	-				+0.1
3,117,328	-				+0.4
3,117,361	+				+0.2
3,117,398	+	rfbE	DVU3005	0.13	+1.5
3,117,398	+	rfbE	DVU3005	0.13	+1.0
3,117,406	-	rfbE	DVU3005	0.14	+1.0
3,117,428	+	rfbE	DVU3005	0.16	+0.6
3,117,428	+	rfbE	DVU3005	0.16	+0.2
3,117,429	-	rfbE	DVU3005	0.16	+0.2
3,117,463	+	rfbE	DVU3005	0.20	+0.5
3,117,536	+	rfbE	DVU3005	0.27	+0.7
3,117,571	-	rfbE	DVU3005	0.30	+0.3
3,117,664	+	rfbE	DVU3005	0.39	+1.1
3,117,727	-	rfbE	DVU3005	0.45	+0.4
3,117,840	-	rfbE	DVU3005	0.56	+0.2
3,117,851	+	rfbE	DVU3005	0.57	+0.2
3,117,888	+	rfbE	DVU3005	0.61	+0.9
3,117,888	+	rfbE	DVU3005	0.61	-0.9
3,117,896	-	rfbE	DVU3005	0.61	-0.7
3,117,925	+	rfbE	DVU3005	0.64	+0.1
3,117,965	-	rfbE	DVU3005	0.68	+0.5
3,117,971	-	rfbE	DVU3005	0.69	+0.4
3,118,025	+	rfbE	DVU3005	0.74	+1.1
3,118,089	-	rfbE	DVU3005	0.80	+0.9
3,118,113	-	rfbE	DVU3005	0.82	+0.5
3,118,113	-	rfbE	DVU3005	0.82	+0.9
3,118,115	+	rfbE	DVU3005	0.83	+0.6
3,118,142	-	rfbE	DVU3005	0.85	+2.1
3,118,170	+	rfbE	DVU3005	0.88	+0.5
3,118,222	-				+0.2
3,118,264	+				+0.2
3,118,320	-				+0.2
3,118,339	+				+0.2
3,118,405	+				+1.0
3,118,434	-				-0.1
3,118,452	-	spsF	DVU3006	0.11	+0.4
3,118,523	-	spsF	DVU3006	0.16	+0.4
3,118,550	+	spsF	DVU3006	0.18	-1.0
3,118,630	-	spsF	DVU3006	0.24	-0.1
3,118,666	+	spsF	DVU3006	0.26	-1.0
3,118,697	+	spsF	DVU3006	0.29	-0.2
3,118,715	-	spsF	DVU3006	0.30	-0.4
3,118,729	-	spsF	DVU3006	0.31	+0.5
3,118,775	+	spsF	DVU3006	0.34	+0.2
3,118,785	-	spsF	DVU3006	0.35	+0.6
3,118,787	+	spsF	DVU3006	0.35	-1.4
3,118,795	-	spsF	DVU3006	0.36	+0.2
3,118,853	+	spsF	DVU3006	0.40	+0.5
3,118,861	-	spsF	DVU3006	0.41	+0.8
3,118,880	-	spsF	DVU3006	0.42	-1.2
3,118,964	-	spsF	DVU3006	0.48	+1.0
3,119,168	-	spsF	DVU3006	0.63	+0.3
3,119,175	+	spsF	DVU3006	0.64	+0.3
3,119,183	-	spsF	DVU3006	0.64	+0.1
3,119,212	+	spsF	DVU3006	0.67	-0.2
3,119,214	+	spsF	DVU3006	0.67	+0.2
3,119,396	-	spsF	DVU3006	0.80	-0.3
3,119,578	+				-0.3
3,119,668	-				+0.4
3,119,748	-				+1.5
3,119,805	-		DVU3007	0.11	-0.9
3,119,831	-		DVU3007	0.13	+2.0
3,119,865	-		DVU3007	0.16	-1.2
3,119,942	+		DVU3007	0.22	-0.0
3,119,956	-		DVU3007	0.23	+1.3
3,119,979	-		DVU3007	0.25	+0.1
3,119,984	-		DVU3007	0.26	+0.3
3,119,984	-		DVU3007	0.26	+0.5
3,119,988	+		DVU3007	0.26	+0.6
3,120,074	-		DVU3007	0.33	-0.1
3,120,140	+		DVU3007	0.38	+0.3
3,120,150	+		DVU3007	0.39	+1.3
3,120,192	+		DVU3007	0.43	+0.1
3,120,200	-		DVU3007	0.43	+0.3
3,120,247	-		DVU3007	0.47	+0.0
3,120,329	-		DVU3007	0.54	+0.4
3,120,470	+		DVU3007	0.65	+0.3
3,120,470	+		DVU3007	0.65	+0.5
3,120,470	+		DVU3007	0.65	-0.4
3,120,470	+		DVU3007	0.65	-0.8
3,120,478	-		DVU3007	0.66	+0.3
3,120,488	-		DVU3007	0.67	-0.2
3,120,543	-		DVU3007	0.71	+0.4
3,120,559	-		DVU3007	0.73	-0.5
3,120,566	-		DVU3007	0.73	+0.5
3,120,571	+		DVU3007	0.74	+2.2
3,120,596	-		DVU3007	0.76	+0.6
3,120,598	+		DVU3007	0.76	+0.4
3,120,653	+		DVU3007	0.80	+1.5