Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2095
Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
2,183,284 | + | thiH | DVU2093 | 0.88 | +0.5 |
2,183,344 | - | -0.5 | |||
2,183,430 | + | -0.4 | |||
2,183,502 | + | -1.0 | |||
2,183,524 | - | -1.1 | |||
2,183,525 | - | -0.9 | |||
2,183,563 | + | thiG | DVU2094 | 0.14 | -1.5 |
2,183,569 | - | thiG | DVU2094 | 0.15 | +1.4 |
2,183,613 | + | thiG | DVU2094 | 0.20 | -0.8 |
2,183,647 | + | thiG | DVU2094 | 0.25 | -0.3 |
2,183,746 | + | thiG | DVU2094 | 0.37 | -0.1 |
2,183,836 | + | thiG | DVU2094 | 0.48 | -1.1 |
2,183,952 | + | thiG | DVU2094 | 0.63 | -0.7 |
2,183,983 | + | thiG | DVU2094 | 0.67 | -0.5 |
2,184,212 | + | -1.3 | |||
2,184,252 | - | -0.6 | |||
2,184,282 | + | thiS | DVU2095 | 0.17 | -1.0 |
2,184,290 | - | thiS | DVU2095 | 0.21 | -0.8 |
2,184,290 | - | thiS | DVU2095 | 0.21 | -0.9 |
2,184,336 | + | thiS | DVU2095 | 0.44 | -0.6 |
2,184,380 | + | thiS | DVU2095 | 0.66 | -1.1 |
2,184,397 | + | thiS | DVU2095 | 0.74 | -0.7 |
2,184,405 | - | thiS | DVU2095 | 0.78 | -0.6 |
2,184,512 | - | +0.2 | |||
2,184,543 | - | -0.5 | |||
2,184,566 | + | -0.2 | |||
2,184,594 | - | -1.0 | |||
2,184,667 | + | +0.2 | |||
2,184,673 | + | +0.6 | |||
2,184,830 | - | -0.4 | |||
2,184,847 | - | -0.4 | |||
2,184,930 | - | -0.5 | |||
2,185,019 | + | DVU2096 | 0.48 | -0.3 | |
2,185,075 | - | +0.7 | |||
2,185,182 | - | +1.2 | |||
2,185,190 | - | +0.2 | |||
2,185,302 | + | -0.6 | |||
2,185,332 | - | -0.2 | |||
2,185,333 | - | +0.0 | |||
2,185,342 | - | -0.0 |
Or see this region's nucleotide sequence