Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1445 and DVU1446 are separated by 142 nucleotides DVU1446 and DVU1447 overlap by 4 nucleotides
DVU1445: DVU1445 - flagellar hook-length control domain protein (TIGR), at 1,522,387 to 1,523,982
DVU1445
DVU1446: DVU1446 - heptosyltransferase family protein (TIGR), at 1,524,125 to 1,525,528
DVU1446
DVU1447: DVU1447 - CgeB family protein (TIGR), at 1,525,525 to 1,527,234
DVU1447
Position (kb)
1524
1525
1526 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1523.129 kb on + strand, within DVU1445 at 1523.132 kb on - strand, within DVU1445 at 1523.202 kb on + strand, within DVU1445 at 1523.205 kb on - strand, within DVU1445 at 1523.377 kb on + strand, within DVU1445 at 1523.381 kb on - strand, within DVU1445 at 1523.385 kb on - strand, within DVU1445 at 1523.385 kb on - strand, within DVU1445 at 1523.511 kb on - strand, within DVU1445 at 1523.680 kb on - strand, within DVU1445 at 1523.862 kb on - strand at 1523.872 kb on - strand at 1523.912 kb on + strand at 1523.933 kb on - strand at 1524.083 kb on + strand at 1524.194 kb on - strand at 1524.297 kb on + strand, within DVU1446 at 1524.297 kb on - strand, within DVU1446 at 1524.370 kb on - strand, within DVU1446 at 1524.390 kb on - strand, within DVU1446 at 1524.482 kb on - strand, within DVU1446 at 1524.604 kb on - strand, within DVU1446 at 1524.635 kb on + strand, within DVU1446 at 1524.713 kb on + strand, within DVU1446 at 1524.744 kb on + strand, within DVU1446 at 1524.768 kb on + strand, within DVU1446 at 1524.822 kb on - strand, within DVU1446 at 1524.828 kb on + strand, within DVU1446 at 1524.998 kb on - strand, within DVU1446 at 1525.074 kb on + strand, within DVU1446 at 1525.081 kb on + strand, within DVU1446 at 1525.086 kb on + strand, within DVU1446 at 1525.125 kb on + strand, within DVU1446 at 1525.163 kb on + strand, within DVU1446 at 1525.174 kb on - strand, within DVU1446 at 1525.469 kb on + strand at 1525.544 kb on + strand at 1525.573 kb on + strand at 1525.575 kb on + strand at 1525.575 kb on + strand at 1525.575 kb on + strand at 1525.575 kb on + strand at 1525.575 kb on + strand at 1525.644 kb on + strand at 1525.734 kb on + strand, within DVU1447 at 1525.742 kb on - strand, within DVU1447 at 1525.784 kb on - strand, within DVU1447 at 1525.847 kb on + strand, within DVU1447 at 1525.847 kb on + strand, within DVU1447 at 1525.847 kb on + strand, within DVU1447 at 1525.934 kb on + strand, within DVU1447 at 1525.958 kb on + strand, within DVU1447 at 1526.035 kb on - strand, within DVU1447 at 1526.207 kb on + strand, within DVU1447 at 1526.259 kb on - strand, within DVU1447 at 1526.318 kb on + strand, within DVU1447 at 1526.331 kb on + strand, within DVU1447 at 1526.339 kb on - strand, within DVU1447 at 1526.491 kb on + strand, within DVU1447
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 1,523,129 + DVU1445 0.46 +1.0 1,523,132 - DVU1445 0.47 +1.1 1,523,202 + DVU1445 0.51 +1.4 1,523,205 - DVU1445 0.51 +1.1 1,523,377 + DVU1445 0.62 +0.8 1,523,381 - DVU1445 0.62 +0.4 1,523,385 - DVU1445 0.63 +0.8 1,523,385 - DVU1445 0.63 +1.2 1,523,511 - DVU1445 0.70 +0.9 1,523,680 - DVU1445 0.81 +1.3 1,523,862 - +1.5 1,523,872 - +0.5 1,523,912 + +0.4 1,523,933 - +0.3 1,524,083 + -0.4 1,524,194 - +0.8 1,524,297 + DVU1446 0.12 +3.1 1,524,297 - DVU1446 0.12 +1.1 1,524,370 - DVU1446 0.17 +1.3 1,524,390 - DVU1446 0.19 +0.2 1,524,482 - DVU1446 0.25 +1.3 1,524,604 - DVU1446 0.34 +1.1 1,524,635 + DVU1446 0.36 +1.0 1,524,713 + DVU1446 0.42 +1.3 1,524,744 + DVU1446 0.44 +0.9 1,524,768 + DVU1446 0.46 +1.0 1,524,822 - DVU1446 0.50 +0.7 1,524,828 + DVU1446 0.50 +1.2 1,524,998 - DVU1446 0.62 +0.9 1,525,074 + DVU1446 0.68 +1.9 1,525,081 + DVU1446 0.68 +0.8 1,525,086 + DVU1446 0.68 +2.6 1,525,125 + DVU1446 0.71 +1.1 1,525,163 + DVU1446 0.74 +1.0 1,525,174 - DVU1446 0.75 +1.2 1,525,469 + +0.7 1,525,544 + +0.7 1,525,573 + +0.3 1,525,575 + +0.9 1,525,575 + +1.5 1,525,575 + +1.5 1,525,575 + +1.1 1,525,575 + +1.1 1,525,644 + +1.0 1,525,734 + DVU1447 0.12 +1.2 1,525,742 - DVU1447 0.13 +1.0 1,525,784 - DVU1447 0.15 +0.9 1,525,847 + DVU1447 0.19 +1.1 1,525,847 + DVU1447 0.19 +0.5 1,525,847 + DVU1447 0.19 +1.0 1,525,934 + DVU1447 0.24 +0.8 1,525,958 + DVU1447 0.25 +0.9 1,526,035 - DVU1447 0.30 -0.4 1,526,207 + DVU1447 0.40 +0.6 1,526,259 - DVU1447 0.43 +1.0 1,526,318 + DVU1447 0.46 -0.7 1,526,331 + DVU1447 0.47 +1.7 1,526,339 - DVU1447 0.48 +0.6 1,526,491 + DVU1447 0.56 +1.2
Or see this region's nucleotide sequence