Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1444
Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/30-60 mM) |
---|---|---|---|---|---|
remove | |||||
1,520,614 | - | flgE | DVU1443 | 0.47 | +1.2 |
1,520,659 | + | flgE | DVU1443 | 0.49 | +1.2 |
1,520,700 | + | flgE | DVU1443 | 0.52 | +1.2 |
1,520,786 | + | flgE | DVU1443 | 0.57 | +0.2 |
1,520,794 | - | flgE | DVU1443 | 0.57 | +1.0 |
1,520,826 | - | flgE | DVU1443 | 0.59 | +1.0 |
1,520,864 | + | flgE | DVU1443 | 0.61 | +1.4 |
1,520,938 | - | flgE | DVU1443 | 0.66 | +1.1 |
1,520,994 | - | flgE | DVU1443 | 0.69 | +1.1 |
1,521,135 | - | flgE | DVU1443 | 0.77 | +1.8 |
1,521,176 | + | flgE | DVU1443 | 0.80 | +1.4 |
1,521,236 | + | flgE | DVU1443 | 0.83 | +1.3 |
1,521,298 | + | flgE | DVU1443 | 0.87 | -0.3 |
1,521,306 | - | flgE | DVU1443 | 0.87 | -0.6 |
1,521,378 | - | +1.0 | |||
1,521,422 | + | +1.1 | |||
1,521,430 | - | +0.9 | |||
1,521,488 | - | +1.4 | |||
1,521,488 | - | +1.2 | |||
1,521,488 | - | -0.0 | |||
1,521,514 | + | +1.0 | |||
1,521,649 | - | -1.0 | |||
1,521,680 | - | flgD | DVU1444 | 0.13 | -0.5 |
1,521,711 | + | flgD | DVU1444 | 0.17 | +0.4 |
1,521,721 | - | flgD | DVU1444 | 0.18 | +0.5 |
1,521,788 | - | flgD | DVU1444 | 0.26 | +1.2 |
1,521,807 | + | flgD | DVU1444 | 0.29 | +0.9 |
1,521,827 | + | flgD | DVU1444 | 0.31 | +1.4 |
1,521,835 | - | flgD | DVU1444 | 0.32 | +2.1 |
1,521,878 | - | flgD | DVU1444 | 0.38 | +0.9 |
1,521,884 | + | flgD | DVU1444 | 0.38 | +0.9 |
1,521,927 | - | flgD | DVU1444 | 0.44 | +1.4 |
1,522,083 | - | flgD | DVU1444 | 0.63 | +1.0 |
1,522,114 | - | flgD | DVU1444 | 0.67 | +1.9 |
1,522,160 | - | flgD | DVU1444 | 0.73 | -0.4 |
1,522,184 | - | flgD | DVU1444 | 0.76 | +0.7 |
1,522,184 | - | flgD | DVU1444 | 0.76 | +1.4 |
1,522,238 | - | flgD | DVU1444 | 0.83 | +0.1 |
1,522,320 | - | +1.2 | |||
1,522,398 | + | +1.1 | |||
1,522,469 | + | +1.0 | |||
1,522,545 | + | -0.1 | |||
1,522,545 | + | +0.8 | |||
1,522,553 | - | DVU1445 | 0.10 | +0.9 | |
1,522,689 | + | DVU1445 | 0.19 | +1.0 | |
1,522,749 | - | DVU1445 | 0.23 | +1.1 | |
1,522,766 | - | DVU1445 | 0.24 | +1.0 | |
1,522,776 | + | DVU1445 | 0.24 | -0.4 | |
1,523,027 | + | DVU1445 | 0.40 | +0.7 | |
1,523,027 | + | DVU1445 | 0.40 | +1.1 | |
1,523,129 | + | DVU1445 | 0.46 | +1.0 | |
1,523,132 | - | DVU1445 | 0.47 | +1.1 | |
1,523,202 | + | DVU1445 | 0.51 | +1.4 | |
1,523,205 | - | DVU1445 | 0.51 | +1.1 |
Or see this region's nucleotide sequence