Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1027 and cmk are separated by 236 nucleotides cmk and hisC overlap by 8 nucleotides hisC and DVU1030 are separated by 266 nucleotides DVU1030 and DVU1032 are separated by 260 nucleotides
DVU1027: DVU1027 - hypothetical protein (TIGR), at 1,131,511 to 1,132,482
DVU1027
DVU1028: cmk - cytidylate kinase (TIGR), at 1,132,719 to 1,133,417
cmk
DVU1029: hisC - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) , at 1,133,410 to 1,134,531
hisC
DVU1030: DVU1030 - universal stress protein family (TIGR), at 1,134,798 to 1,135,241
DVU1030
DVU1032: DVU1032 - hypothetical protein (TIGR), at 1,135,502 to 1,136,011
DVU1032
Position (kb)
1133
1134
1135 Strain fitness (log2 ratio)
-2
-1
0
1 at 1132.531 kb on + strand at 1132.679 kb on - strand at 1132.716 kb on + strand at 1133.499 kb on + strand at 1133.499 kb on + strand at 1133.507 kb on - strand at 1133.706 kb on - strand, within hisC at 1133.762 kb on - strand, within hisC at 1133.798 kb on + strand, within hisC at 1133.981 kb on + strand, within hisC at 1133.989 kb on - strand, within hisC at 1134.535 kb on - strand at 1134.680 kb on - strand at 1134.685 kb on + strand at 1134.695 kb on + strand at 1134.703 kb on - strand at 1134.703 kb on - strand at 1134.718 kb on + strand at 1134.774 kb on + strand at 1134.922 kb on + strand, within DVU1030 at 1134.925 kb on + strand, within DVU1030 at 1134.976 kb on + strand, within DVU1030 at 1135.070 kb on + strand, within DVU1030 at 1135.186 kb on + strand, within DVU1030 at 1135.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 1,132,531 + +0.6 1,132,679 - +0.1 1,132,716 + -0.8 1,133,499 + -0.7 1,133,499 + -1.6 1,133,507 - -0.3 1,133,706 - hisC DVU1029 0.26 -2.3 1,133,762 - hisC DVU1029 0.31 -1.3 1,133,798 + hisC DVU1029 0.35 -1.0 1,133,981 + hisC DVU1029 0.51 -0.3 1,133,989 - hisC DVU1029 0.52 -0.6 1,134,535 - -0.5 1,134,680 - -0.6 1,134,685 + -0.6 1,134,695 + -0.3 1,134,703 - -0.7 1,134,703 - -0.3 1,134,718 + +0.4 1,134,774 + -0.8 1,134,922 + DVU1030 0.28 +0.8 1,134,925 + DVU1030 0.29 -0.4 1,134,976 + DVU1030 0.40 -0.4 1,135,070 + DVU1030 0.61 -0.4 1,135,186 + DVU1030 0.87 -0.4 1,135,484 - -0.1
Or see this region's nucleotide sequence