Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hom and DVU0891 are separated by 1 nucleotides DVU0891 and aroK-1 are separated by 123 nucleotides aroK-1 and DVU0893 are separated by 28 nucleotides
DVU0890: hom - homoserine dehydrogenase (TIGR), at 981,134 to 982,408
hom
DVU0891: DVU0891 - aminotransferase, classes I and II (TIGR), at 982,410 to 983,603
DVU0891
DVU0892: aroK-1 - shikimate kinase (TIGR), at 983,727 to 984,254
aroK-1
DVU0893: DVU0893 - universal stress protein family (TIGR), at 984,283 to 984,765
DVU0893
Position (kb) 982
983
984 Strain fitness (log2 ratio) -1
0
1
2
3 at 982.009 kb on - strand, within hom at 982.425 kb on - strand at 982.482 kb on + strand at 982.579 kb on - strand, within DVU0891 at 982.754 kb on - strand, within DVU0891 at 982.759 kb on - strand, within DVU0891 at 982.806 kb on - strand, within DVU0891 at 982.822 kb on - strand, within DVU0891 at 982.867 kb on - strand, within DVU0891 at 982.890 kb on - strand, within DVU0891 at 982.942 kb on - strand, within DVU0891 at 983.389 kb on - strand, within DVU0891 at 983.513 kb on - strand at 983.629 kb on + strand at 983.655 kb on - strand at 983.661 kb on + strand at 983.713 kb on + strand at 983.726 kb on - strand at 983.953 kb on - strand, within aroK-1 at 984.079 kb on + strand, within aroK-1 at 984.189 kb on - strand, within aroK-1 at 984.227 kb on - strand at 984.259 kb on + strand at 984.281 kb on - strand at 984.356 kb on + strand, within DVU0893 at 984.377 kb on + strand, within DVU0893 at 984.385 kb on - strand, within DVU0893 at 984.451 kb on + strand, within DVU0893 at 984.515 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893 at 984.529 kb on + strand, within DVU0893
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 982,009 - hom DVU0890 0.69 +0.6 982,425 - -0.4 982,482 + -1.4 982,579 - DVU0891 0.14 -0.9 982,754 - DVU0891 0.29 -0.9 982,759 - DVU0891 0.29 -0.3 982,806 - DVU0891 0.33 -0.1 982,822 - DVU0891 0.35 +0.0 982,867 - DVU0891 0.38 -0.3 982,890 - DVU0891 0.40 -0.9 982,942 - DVU0891 0.45 -0.1 983,389 - DVU0891 0.82 -1.4 983,513 - -1.6 983,629 + +0.0 983,655 - -0.2 983,661 + +0.7 983,713 + -0.6 983,726 - -0.4 983,953 - aroK-1 DVU0892 0.43 +3.3 984,079 + aroK-1 DVU0892 0.67 +0.3 984,189 - aroK-1 DVU0892 0.88 -1.5 984,227 - -0.9 984,259 + -0.1 984,281 - -0.9 984,356 + DVU0893 0.15 -0.4 984,377 + DVU0893 0.19 -0.9 984,385 - DVU0893 0.21 -0.4 984,451 + DVU0893 0.35 +0.0 984,515 + DVU0893 0.48 -0.3 984,529 + DVU0893 0.51 -0.2 984,529 + DVU0893 0.51 -0.4
Or see this region's nucleotide sequence