Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0822 and tRNA-Ser are separated by 155 nucleotides tRNA-Ser and argJ are separated by 156 nucleotides argJ and secA are separated by 278 nucleotides
DVU0822: DVU0822 - hypothetical protein (TIGR), at 910,522 to 911,178
DVU0822
DVU_tRNA-Ser-3: tRNA-Ser - tRNA with anticodon GCT for Ser (VIMSS-AUTO), at 911,334 to 911,428
tRNA-Ser
DVU0823: argJ - Glutamate N-acetyltransferase (EC 2.3.1.35) (from data) , at 911,585 to 912,766
argJ
DVU0825: secA - preprotein translocase, SecA subunit (TIGR), at 913,045 to 915,546
secA
Position (kb)
911
912
913 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 910.619 kb on + strand, within DVU0822 at 910.878 kb on + strand, within DVU0822 at 910.971 kb on - strand, within DVU0822 at 911.587 kb on - strand at 911.661 kb on - strand at 911.719 kb on - strand, within argJ at 911.729 kb on + strand, within argJ at 911.749 kb on - strand, within argJ at 911.761 kb on + strand, within argJ at 911.761 kb on + strand, within argJ at 911.761 kb on + strand, within argJ at 911.960 kb on - strand, within argJ at 912.086 kb on + strand, within argJ at 912.094 kb on - strand, within argJ at 912.233 kb on + strand, within argJ at 912.252 kb on + strand, within argJ at 912.361 kb on - strand, within argJ at 912.399 kb on + strand, within argJ at 912.505 kb on - strand, within argJ at 912.548 kb on + strand, within argJ at 912.627 kb on + strand, within argJ at 912.635 kb on - strand, within argJ at 912.728 kb on + strand at 912.755 kb on - strand at 912.840 kb on - strand at 912.840 kb on - strand at 912.855 kb on + strand at 912.939 kb on + strand at 912.949 kb on - strand at 913.036 kb on - strand at 913.109 kb on + strand at 913.117 kb on - strand at 913.117 kb on - strand at 913.117 kb on - strand at 913.142 kb on - strand at 913.142 kb on - strand at 913.202 kb on + strand at 913.233 kb on + strand at 913.254 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 910,619 + DVU0822 0.15 -0.1 910,878 + DVU0822 0.54 -0.2 910,971 - DVU0822 0.68 +0.7 911,587 - +0.7 911,661 - -0.3 911,719 - argJ DVU0823 0.11 -0.8 911,729 + argJ DVU0823 0.12 -2.5 911,749 - argJ DVU0823 0.14 -0.4 911,761 + argJ DVU0823 0.15 -2.7 911,761 + argJ DVU0823 0.15 -1.1 911,761 + argJ DVU0823 0.15 -2.2 911,960 - argJ DVU0823 0.32 -2.8 912,086 + argJ DVU0823 0.42 -3.0 912,094 - argJ DVU0823 0.43 -3.9 912,233 + argJ DVU0823 0.55 -1.7 912,252 + argJ DVU0823 0.56 -2.6 912,361 - argJ DVU0823 0.66 -2.5 912,399 + argJ DVU0823 0.69 -1.9 912,505 - argJ DVU0823 0.78 -1.1 912,548 + argJ DVU0823 0.81 -2.5 912,627 + argJ DVU0823 0.88 -3.2 912,635 - argJ DVU0823 0.89 -1.3 912,728 + -2.5 912,755 - -1.0 912,840 - -1.2 912,840 - +0.9 912,855 + -0.3 912,939 + -0.3 912,949 - -1.0 913,036 - -0.1 913,109 + +0.5 913,117 - +0.7 913,117 - -0.5 913,117 - -0.3 913,142 - -1.1 913,142 - +0.6 913,202 + -0.9 913,233 + -0.9 913,254 - -0.6
Or see this region's nucleotide sequence