Experiment: Formate/Acetate-Sulfate (60/30-60 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVU0805 are separated by 167 nucleotides DVU0805 and DVU0806 overlap by 4 nucleotides DVU0806 and trmU are separated by 269 nucleotides
DVU0804: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 889,782 to 891,254
atoC
DVU0805: DVU0805 - hypothetical protein (TIGR), at 891,422 to 891,718
DVU0805
DVU0806: DVU0806 - chemotaxis protein CheY, putative (TIGR), at 891,715 to 892,125
DVU0806
DVU0807: trmU - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (TIGR), at 892,395 to 893,435
trmU
Position (kb) 891
892
893 Strain fitness (log2 ratio) -1
0
1 at 890.763 kb on + strand, within atoC at 890.902 kb on + strand, within atoC at 890.931 kb on - strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.945 kb on + strand, within atoC at 890.950 kb on + strand, within atoC at 890.953 kb on - strand, within atoC at 890.953 kb on - strand, within atoC at 890.953 kb on - strand, within atoC at 891.107 kb on + strand at 891.120 kb on - strand at 891.138 kb on + strand at 891.146 kb on + strand at 891.146 kb on + strand at 891.159 kb on - strand at 891.347 kb on - strand at 891.347 kb on - strand at 891.471 kb on - strand, within DVU0805 at 891.476 kb on - strand, within DVU0805 at 891.496 kb on + strand, within DVU0805 at 891.614 kb on + strand, within DVU0805 at 891.653 kb on - strand, within DVU0805 at 891.873 kb on + strand, within DVU0806 at 891.925 kb on + strand, within DVU0806 at 891.957 kb on - strand, within DVU0806 at 891.982 kb on + strand, within DVU0806 at 892.030 kb on + strand, within DVU0806 at 892.049 kb on - strand, within DVU0806 at 892.049 kb on - strand, within DVU0806 at 892.056 kb on - strand, within DVU0806 at 892.064 kb on + strand, within DVU0806 at 892.072 kb on - strand, within DVU0806 at 892.286 kb on + strand at 892.291 kb on + strand at 892.360 kb on - strand at 892.360 kb on - strand at 892.393 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/30-60 mM) remove 890,763 + atoC DVU0804 0.67 +0.4 890,902 + atoC DVU0804 0.76 -0.2 890,931 - atoC DVU0804 0.78 +1.6 890,945 + atoC DVU0804 0.79 +0.3 890,945 + atoC DVU0804 0.79 -0.5 890,945 + atoC DVU0804 0.79 +0.0 890,945 + atoC DVU0804 0.79 +0.0 890,945 + atoC DVU0804 0.79 -1.0 890,950 + atoC DVU0804 0.79 -0.1 890,953 - atoC DVU0804 0.79 -0.1 890,953 - atoC DVU0804 0.79 +0.0 890,953 - atoC DVU0804 0.79 -1.1 891,107 + -0.0 891,120 - -0.5 891,138 + +1.1 891,146 + -0.5 891,146 + +1.3 891,159 - -0.3 891,347 - -0.6 891,347 - +0.3 891,471 - DVU0805 0.16 -0.3 891,476 - DVU0805 0.18 -1.0 891,496 + DVU0805 0.25 -0.4 891,614 + DVU0805 0.65 +0.0 891,653 - DVU0805 0.78 -0.5 891,873 + DVU0806 0.38 -0.7 891,925 + DVU0806 0.51 -1.5 891,957 - DVU0806 0.59 -0.0 891,982 + DVU0806 0.65 -0.4 892,030 + DVU0806 0.77 -0.2 892,049 - DVU0806 0.81 -0.6 892,049 - DVU0806 0.81 -0.6 892,056 - DVU0806 0.83 +0.7 892,064 + DVU0806 0.85 -1.0 892,072 - DVU0806 0.87 -1.6 892,286 + +0.3 892,291 + -0.1 892,360 - +0.4 892,360 - +0.0 892,393 + +0.0
Or see this region's nucleotide sequence