Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4122

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4121 and Pf6N2E2_4122 overlap by 4 nucleotidesPf6N2E2_4122 and Pf6N2E2_4123 are separated by 70 nucleotidesPf6N2E2_4123 and Pf6N2E2_4124 are separated by 167 nucleotides Pf6N2E2_4121 - Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-), at 4,800,224 to 4,801,534 _4121 Pf6N2E2_4122 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 4,801,531 to 4,802,490 _4122 Pf6N2E2_4123 - Peptide deformylase (EC 3.5.1.88), at 4,802,561 to 4,803,067 _4123 Pf6N2E2_4124 - Uncharacterized protein with LysM domain, COG1652, at 4,803,235 to 4,804,260 _4124 Position (kb) 4801 4802 4803Strain fitness (log2 ratio) -2 -1 0 1at 4800.933 kb on + strand, within Pf6N2E2_4121at 4800.934 kb on - strand, within Pf6N2E2_4121at 4800.982 kb on - strand, within Pf6N2E2_4121at 4802.495 kb on - strandat 4802.495 kb on - strandat 4802.495 kb on - strandat 4802.506 kb on - strandat 4802.506 kb on - strandat 4802.621 kb on - strand, within Pf6N2E2_4123at 4803.068 kb on - strandat 4803.068 kb on - strandat 4803.077 kb on - strandat 4803.077 kb on - strandat 4803.077 kb on - strandat 4803.077 kb on - strandat 4803.094 kb on - strandat 4803.094 kb on - strandat 4803.143 kb on - strandat 4803.203 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.217 kb on - strandat 4803.220 kb on - strandat 4803.249 kb on - strandat 4803.325 kb on + strandat 4803.325 kb on + strandat 4803.325 kb on + strandat 4803.325 kb on + strandat 4803.326 kb on - strandat 4803.326 kb on - strandat 4803.370 kb on + strand, within Pf6N2E2_4124at 4803.370 kb on + strand, within Pf6N2E2_4124at 4803.370 kb on + strand, within Pf6N2E2_4124at 4803.370 kb on + strand, within Pf6N2E2_4124at 4803.370 kb on + strand, within Pf6N2E2_4124at 4803.370 kb on + strand, within Pf6N2E2_4124at 4803.371 kb on - strand, within Pf6N2E2_4124at 4803.371 kb on - strand, within Pf6N2E2_4124at 4803.371 kb on - strand, within Pf6N2E2_4124at 4803.371 kb on - strand, within Pf6N2E2_4124at 4803.469 kb on + strand, within Pf6N2E2_4124at 4803.469 kb on + strand, within Pf6N2E2_4124at 4803.469 kb on + strand, within Pf6N2E2_4124at 4803.469 kb on + strand, within Pf6N2E2_4124at 4803.469 kb on + strand, within Pf6N2E2_4124at 4803.469 kb on + strand, within Pf6N2E2_4124at 4803.470 kb on - strand, within Pf6N2E2_4124at 4803.470 kb on - strand, within Pf6N2E2_4124at 4803.470 kb on - strand, within Pf6N2E2_4124at 4803.470 kb on - strand, within Pf6N2E2_4124

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,800,933 + Pf6N2E2_4121 0.54 +0.1
4,800,934 - Pf6N2E2_4121 0.54 +0.2
4,800,982 - Pf6N2E2_4121 0.58 -0.6
4,802,495 - -0.8
4,802,495 - +0.6
4,802,495 - +0.1
4,802,506 - +0.2
4,802,506 - -0.4
4,802,621 - Pf6N2E2_4123 0.12 -2.4
4,803,068 - +1.0
4,803,068 - -0.0
4,803,077 - -0.5
4,803,077 - -0.4
4,803,077 - +0.2
4,803,077 - -0.5
4,803,094 - -0.1
4,803,094 - +0.5
4,803,143 - +0.8
4,803,203 - -0.6
4,803,217 - +0.7
4,803,217 - -0.1
4,803,217 - -0.2
4,803,217 - +0.9
4,803,217 - +0.4
4,803,217 - -0.5
4,803,217 - +0.2
4,803,217 - -0.3
4,803,217 - +0.6
4,803,220 - +0.4
4,803,249 - +0.3
4,803,325 + -0.6
4,803,325 + +0.6
4,803,325 + -2.1
4,803,325 + -0.1
4,803,326 - +0.1
4,803,326 - +0.0
4,803,370 + Pf6N2E2_4124 0.13 -0.1
4,803,370 + Pf6N2E2_4124 0.13 +0.1
4,803,370 + Pf6N2E2_4124 0.13 +0.2
4,803,370 + Pf6N2E2_4124 0.13 -0.3
4,803,370 + Pf6N2E2_4124 0.13 -0.6
4,803,370 + Pf6N2E2_4124 0.13 +0.7
4,803,371 - Pf6N2E2_4124 0.13 -0.5
4,803,371 - Pf6N2E2_4124 0.13 -1.7
4,803,371 - Pf6N2E2_4124 0.13 -0.0
4,803,371 - Pf6N2E2_4124 0.13 -0.4
4,803,469 + Pf6N2E2_4124 0.23 -2.4
4,803,469 + Pf6N2E2_4124 0.23 +0.4
4,803,469 + Pf6N2E2_4124 0.23 +0.9
4,803,469 + Pf6N2E2_4124 0.23 -0.6
4,803,469 + Pf6N2E2_4124 0.23 -0.3
4,803,469 + Pf6N2E2_4124 0.23 +0.1
4,803,470 - Pf6N2E2_4124 0.23 +0.7
4,803,470 - Pf6N2E2_4124 0.23 +0.8
4,803,470 - Pf6N2E2_4124 0.23 -0.2
4,803,470 - Pf6N2E2_4124 0.23 +0.6

Or see this region's nucleotide sequence