Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4071

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4070 and Pf6N2E2_4071 are separated by 167 nucleotidesPf6N2E2_4071 and Pf6N2E2_4072 are separated by 112 nucleotides Pf6N2E2_4070 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 4,745,529 to 4,746,449 _4070 Pf6N2E2_4071 - Phosphate transport system regulatory protein PhoU, at 4,746,617 to 4,747,378 _4071 Pf6N2E2_4072 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 4,747,491 to 4,748,324 _4072 Position (kb) 4746 4747 4748Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4745.684 kb on - strand, within Pf6N2E2_4070at 4745.913 kb on + strand, within Pf6N2E2_4070at 4746.004 kb on - strand, within Pf6N2E2_4070at 4746.077 kb on + strand, within Pf6N2E2_4070at 4746.077 kb on + strand, within Pf6N2E2_4070at 4746.105 kb on + strand, within Pf6N2E2_4070at 4746.105 kb on + strand, within Pf6N2E2_4070at 4746.106 kb on - strand, within Pf6N2E2_4070at 4746.106 kb on - strand, within Pf6N2E2_4070at 4746.373 kb on + strandat 4746.373 kb on + strandat 4746.373 kb on + strandat 4746.373 kb on + strandat 4746.373 kb on + strandat 4746.373 kb on + strandat 4746.373 kb on + strandat 4746.374 kb on - strandat 4746.374 kb on - strandat 4746.374 kb on - strandat 4746.374 kb on - strandat 4746.443 kb on + strandat 4746.443 kb on + strandat 4746.444 kb on - strandat 4746.444 kb on - strandat 4746.444 kb on - strandat 4746.444 kb on - strandat 4746.444 kb on - strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.455 kb on + strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.456 kb on - strandat 4746.463 kb on + strandat 4746.464 kb on - strandat 4746.491 kb on + strandat 4746.492 kb on - strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.618 kb on + strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.619 kb on - strandat 4746.622 kb on + strandat 4746.646 kb on + strandat 4746.646 kb on + strandat 4746.647 kb on - strandat 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.729 kb on + strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4746.730 kb on - strand, within Pf6N2E2_4071at 4747.412 kb on + strandat 4747.412 kb on + strandat 4747.445 kb on - strandat 4747.456 kb on - strandat 4747.456 kb on - strandat 4747.588 kb on + strand, within Pf6N2E2_4072at 4747.588 kb on + strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.589 kb on - strand, within Pf6N2E2_4072at 4747.675 kb on + strand, within Pf6N2E2_4072at 4747.675 kb on + strand, within Pf6N2E2_4072at 4747.676 kb on - strand, within Pf6N2E2_4072at 4747.676 kb on - strand, within Pf6N2E2_4072at 4747.927 kb on + strand, within Pf6N2E2_4072at 4747.927 kb on + strand, within Pf6N2E2_4072at 4748.185 kb on + strand, within Pf6N2E2_4072at 4748.206 kb on + strand, within Pf6N2E2_4072at 4748.206 kb on + strand, within Pf6N2E2_4072at 4748.207 kb on - strand, within Pf6N2E2_4072at 4748.306 kb on + strandat 4748.307 kb on - strandat 4748.307 kb on - strandat 4748.307 kb on - strandat 4748.342 kb on - strandat 4748.342 kb on - strandat 4748.355 kb on + strandat 4748.355 kb on + strandat 4748.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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4,745,684 - Pf6N2E2_4070 0.17 -0.4
4,745,913 + Pf6N2E2_4070 0.42 +0.7
4,746,004 - Pf6N2E2_4070 0.52 -0.1
4,746,077 + Pf6N2E2_4070 0.60 +0.6
4,746,077 + Pf6N2E2_4070 0.60 +2.0
4,746,105 + Pf6N2E2_4070 0.63 -0.2
4,746,105 + Pf6N2E2_4070 0.63 -0.7
4,746,106 - Pf6N2E2_4070 0.63 -0.7
4,746,106 - Pf6N2E2_4070 0.63 -0.4
4,746,373 + -0.1
4,746,373 + +0.9
4,746,373 + +0.1
4,746,373 + +1.0
4,746,373 + +0.5
4,746,373 + +0.4
4,746,373 + -2.3
4,746,374 - -0.8
4,746,374 - +0.1
4,746,374 - +0.1
4,746,374 - +1.4
4,746,443 + -1.0
4,746,443 + +0.0
4,746,444 - +0.1
4,746,444 - +0.2
4,746,444 - +0.3
4,746,444 - -0.9
4,746,444 - +0.7
4,746,455 + -0.2
4,746,455 + -0.3
4,746,455 + +0.9
4,746,455 + +0.4
4,746,455 + -2.5
4,746,455 + +0.2
4,746,455 + -0.2
4,746,455 + +0.1
4,746,455 + +0.5
4,746,456 - -0.4
4,746,456 - +0.4
4,746,456 - +0.2
4,746,456 - +0.9
4,746,456 - +0.5
4,746,456 - -0.4
4,746,456 - +0.6
4,746,456 - +0.1
4,746,456 - -0.7
4,746,456 - +0.1
4,746,456 - +0.9
4,746,456 - -1.1
4,746,456 - +1.3
4,746,463 + +0.4
4,746,464 - -0.9
4,746,491 + +0.0
4,746,492 - -0.3
4,746,618 + +0.9
4,746,618 + +0.1
4,746,618 + +0.8
4,746,618 + -0.8
4,746,618 + -0.2
4,746,618 + +0.5
4,746,618 + +0.5
4,746,618 + +0.6
4,746,618 + -0.7
4,746,618 + -0.1
4,746,618 + +0.5
4,746,618 + +1.3
4,746,618 + -0.3
4,746,619 - +0.2
4,746,619 - +0.4
4,746,619 - +0.0
4,746,619 - +0.7
4,746,619 - -0.1
4,746,619 - +0.1
4,746,619 - +1.8
4,746,622 + +0.2
4,746,646 + +0.0
4,746,646 + +0.6
4,746,647 - -1.5
4,746,729 + Pf6N2E2_4071 0.15 -3.4
4,746,729 + Pf6N2E2_4071 0.15 -2.1
4,746,729 + Pf6N2E2_4071 0.15 -0.9
4,746,729 + Pf6N2E2_4071 0.15 -1.2
4,746,730 - Pf6N2E2_4071 0.15 -1.2
4,746,730 - Pf6N2E2_4071 0.15 -2.1
4,746,730 - Pf6N2E2_4071 0.15 -3.6
4,746,730 - Pf6N2E2_4071 0.15 -2.4
4,747,412 + -0.2
4,747,412 + -1.4
4,747,445 - -0.1
4,747,456 - +0.2
4,747,456 - +0.6
4,747,588 + Pf6N2E2_4072 0.12 +0.6
4,747,588 + Pf6N2E2_4072 0.12 +0.8
4,747,589 - Pf6N2E2_4072 0.12 -0.0
4,747,589 - Pf6N2E2_4072 0.12 +0.7
4,747,589 - Pf6N2E2_4072 0.12 +1.6
4,747,589 - Pf6N2E2_4072 0.12 +1.2
4,747,589 - Pf6N2E2_4072 0.12 -0.4
4,747,675 + Pf6N2E2_4072 0.22 +0.2
4,747,675 + Pf6N2E2_4072 0.22 -0.6
4,747,676 - Pf6N2E2_4072 0.22 +2.5
4,747,676 - Pf6N2E2_4072 0.22 -0.1
4,747,927 + Pf6N2E2_4072 0.52 -0.6
4,747,927 + Pf6N2E2_4072 0.52 +0.6
4,748,185 + Pf6N2E2_4072 0.83 -0.0
4,748,206 + Pf6N2E2_4072 0.86 +0.8
4,748,206 + Pf6N2E2_4072 0.86 +1.5
4,748,207 - Pf6N2E2_4072 0.86 -1.4
4,748,306 + +0.9
4,748,307 - +2.8
4,748,307 - -0.2
4,748,307 - -0.2
4,748,342 - -1.1
4,748,342 - +1.2
4,748,355 + -0.2
4,748,355 + -0.2
4,748,356 - +0.3

Or see this region's nucleotide sequence