Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3462 and Pf6N2E2_3463 are separated by 71 nucleotides Pf6N2E2_3463 and Pf6N2E2_3464 are separated by 101 nucleotides
Pf6N2E2_3462 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27), at 4,042,563 to 4,044,056
_3462
Pf6N2E2_3463 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 4,044,128 to 4,045,498
_3463
Pf6N2E2_3464 - LysR family transcriptional regulator PA0133, at 4,045,600 to 4,046,520
_3464
Position (kb)
4044
4045
4046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4043.240 kb on - strand, within Pf6N2E2_3462 at 4043.359 kb on + strand, within Pf6N2E2_3462 at 4043.359 kb on + strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.360 kb on - strand, within Pf6N2E2_3462 at 4043.365 kb on + strand, within Pf6N2E2_3462 at 4043.366 kb on - strand, within Pf6N2E2_3462 at 4043.366 kb on - strand, within Pf6N2E2_3462 at 4043.581 kb on + strand, within Pf6N2E2_3462 at 4043.582 kb on - strand, within Pf6N2E2_3462 at 4043.582 kb on - strand, within Pf6N2E2_3462 at 4043.582 kb on - strand, within Pf6N2E2_3462 at 4043.679 kb on + strand, within Pf6N2E2_3462 at 4043.679 kb on + strand, within Pf6N2E2_3462 at 4043.679 kb on + strand, within Pf6N2E2_3462 at 4043.680 kb on - strand, within Pf6N2E2_3462 at 4043.692 kb on + strand, within Pf6N2E2_3462 at 4043.813 kb on + strand, within Pf6N2E2_3462 at 4043.814 kb on - strand, within Pf6N2E2_3462 at 4043.882 kb on + strand, within Pf6N2E2_3462 at 4043.882 kb on + strand, within Pf6N2E2_3462 at 4043.882 kb on + strand, within Pf6N2E2_3462 at 4043.883 kb on - strand, within Pf6N2E2_3462 at 4043.883 kb on - strand, within Pf6N2E2_3462 at 4043.883 kb on - strand, within Pf6N2E2_3462 at 4043.961 kb on - strand at 4043.961 kb on - strand at 4044.072 kb on - strand at 4044.102 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.112 kb on + strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.113 kb on - strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.240 kb on + strand at 4044.241 kb on - strand at 4044.241 kb on - strand at 4044.241 kb on - strand at 4044.337 kb on - strand, within Pf6N2E2_3463 at 4044.337 kb on - strand, within Pf6N2E2_3463 at 4044.337 kb on - strand, within Pf6N2E2_3463 at 4044.340 kb on + strand, within Pf6N2E2_3463 at 4044.340 kb on + strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.341 kb on - strand, within Pf6N2E2_3463 at 4044.492 kb on + strand, within Pf6N2E2_3463 at 4044.492 kb on + strand, within Pf6N2E2_3463 at 4044.492 kb on + strand, within Pf6N2E2_3463 at 4044.493 kb on - strand, within Pf6N2E2_3463 at 4044.499 kb on - strand, within Pf6N2E2_3463 at 4044.555 kb on + strand, within Pf6N2E2_3463 at 4044.555 kb on + strand, within Pf6N2E2_3463 at 4044.555 kb on + strand, within Pf6N2E2_3463 at 4044.556 kb on - strand, within Pf6N2E2_3463 at 4044.754 kb on - strand, within Pf6N2E2_3463 at 4044.754 kb on - strand, within Pf6N2E2_3463 at 4044.754 kb on - strand, within Pf6N2E2_3463 at 4044.900 kb on + strand, within Pf6N2E2_3463 at 4044.900 kb on + strand, within Pf6N2E2_3463 at 4044.900 kb on + strand, within Pf6N2E2_3463 at 4045.021 kb on - strand, within Pf6N2E2_3463 at 4045.021 kb on - strand, within Pf6N2E2_3463 at 4045.077 kb on + strand, within Pf6N2E2_3463 at 4045.225 kb on - strand, within Pf6N2E2_3463 at 4045.317 kb on + strand, within Pf6N2E2_3463 at 4045.317 kb on + strand, within Pf6N2E2_3463 at 4045.317 kb on + strand, within Pf6N2E2_3463 at 4045.318 kb on - strand, within Pf6N2E2_3463 at 4045.407 kb on + strand at 4045.407 kb on + strand at 4045.408 kb on - strand at 4045.498 kb on + strand at 4045.499 kb on - strand at 4045.499 kb on - strand at 4045.531 kb on + strand at 4045.531 kb on + strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.532 kb on - strand at 4045.573 kb on - strand at 4045.599 kb on + strand at 4045.648 kb on - strand at 4045.648 kb on - strand at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.834 kb on + strand, within Pf6N2E2_3464 at 4045.853 kb on + strand, within Pf6N2E2_3464 at 4045.853 kb on + strand, within Pf6N2E2_3464 at 4045.854 kb on - strand, within Pf6N2E2_3464 at 4045.854 kb on - strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.084 kb on + strand, within Pf6N2E2_3464 at 4046.119 kb on + strand, within Pf6N2E2_3464 at 4046.131 kb on + strand, within Pf6N2E2_3464 at 4046.131 kb on + strand, within Pf6N2E2_3464 at 4046.132 kb on - strand, within Pf6N2E2_3464 at 4046.152 kb on + strand, within Pf6N2E2_3464 at 4046.152 kb on + strand, within Pf6N2E2_3464 at 4046.153 kb on - strand, within Pf6N2E2_3464 at 4046.153 kb on - strand, within Pf6N2E2_3464 at 4046.153 kb on - strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.179 kb on + strand, within Pf6N2E2_3464 at 4046.180 kb on - strand, within Pf6N2E2_3464 at 4046.262 kb on - strand, within Pf6N2E2_3464 at 4046.262 kb on - strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.344 kb on + strand, within Pf6N2E2_3464 at 4046.345 kb on - strand, within Pf6N2E2_3464 at 4046.345 kb on - strand, within Pf6N2E2_3464 at 4046.345 kb on - strand, within Pf6N2E2_3464 at 4046.353 kb on + strand, within Pf6N2E2_3464 at 4046.353 kb on + strand, within Pf6N2E2_3464 at 4046.368 kb on + strand, within Pf6N2E2_3464 at 4046.368 kb on + strand, within Pf6N2E2_3464 at 4046.368 kb on + strand, within Pf6N2E2_3464 at 4046.428 kb on + strand, within Pf6N2E2_3464 at 4046.428 kb on + strand, within Pf6N2E2_3464 at 4046.429 kb on - strand at 4046.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 4,043,240 - Pf6N2E2_3462 0.45 +0.8 4,043,359 + Pf6N2E2_3462 0.53 -0.0 4,043,359 + Pf6N2E2_3462 0.53 +0.4 4,043,360 - Pf6N2E2_3462 0.53 +0.8 4,043,360 - Pf6N2E2_3462 0.53 -0.0 4,043,360 - Pf6N2E2_3462 0.53 +1.1 4,043,360 - Pf6N2E2_3462 0.53 -0.2 4,043,360 - Pf6N2E2_3462 0.53 +0.5 4,043,360 - Pf6N2E2_3462 0.53 -1.9 4,043,360 - Pf6N2E2_3462 0.53 -0.1 4,043,360 - Pf6N2E2_3462 0.53 -0.4 4,043,365 + Pf6N2E2_3462 0.54 +0.4 4,043,366 - Pf6N2E2_3462 0.54 -1.2 4,043,366 - Pf6N2E2_3462 0.54 +0.2 4,043,581 + Pf6N2E2_3462 0.68 -0.0 4,043,582 - Pf6N2E2_3462 0.68 -0.7 4,043,582 - Pf6N2E2_3462 0.68 -0.2 4,043,582 - Pf6N2E2_3462 0.68 -0.3 4,043,679 + Pf6N2E2_3462 0.75 -0.2 4,043,679 + Pf6N2E2_3462 0.75 -0.4 4,043,679 + Pf6N2E2_3462 0.75 -0.7 4,043,680 - Pf6N2E2_3462 0.75 -0.3 4,043,692 + Pf6N2E2_3462 0.76 +0.3 4,043,813 + Pf6N2E2_3462 0.84 -0.2 4,043,814 - Pf6N2E2_3462 0.84 +0.3 4,043,882 + Pf6N2E2_3462 0.88 +0.5 4,043,882 + Pf6N2E2_3462 0.88 -0.5 4,043,882 + Pf6N2E2_3462 0.88 +0.4 4,043,883 - Pf6N2E2_3462 0.88 +0.3 4,043,883 - Pf6N2E2_3462 0.88 -0.2 4,043,883 - Pf6N2E2_3462 0.88 -1.0 4,043,961 - +1.0 4,043,961 - -2.7 4,044,072 - -1.0 4,044,102 + +0.5 4,044,112 + +0.2 4,044,112 + -1.1 4,044,112 + +0.5 4,044,112 + +0.2 4,044,112 + +1.0 4,044,112 + +0.4 4,044,112 + +0.6 4,044,112 + +1.5 4,044,112 + +0.2 4,044,113 - +0.6 4,044,113 - -1.1 4,044,113 - +0.1 4,044,113 - -0.1 4,044,113 - +0.2 4,044,113 - +0.3 4,044,113 - +0.2 4,044,240 + +1.2 4,044,240 + +1.5 4,044,240 + +1.3 4,044,240 + +1.5 4,044,240 + +0.2 4,044,240 + +2.4 4,044,240 + +0.6 4,044,240 + +1.2 4,044,240 + +1.5 4,044,241 - -0.1 4,044,241 - -0.0 4,044,241 - +0.6 4,044,337 - Pf6N2E2_3463 0.15 +1.2 4,044,337 - Pf6N2E2_3463 0.15 +0.5 4,044,337 - Pf6N2E2_3463 0.15 -0.3 4,044,340 + Pf6N2E2_3463 0.15 +0.0 4,044,340 + Pf6N2E2_3463 0.15 +0.2 4,044,341 - Pf6N2E2_3463 0.16 +0.2 4,044,341 - Pf6N2E2_3463 0.16 +0.6 4,044,341 - Pf6N2E2_3463 0.16 -0.0 4,044,341 - Pf6N2E2_3463 0.16 +0.6 4,044,492 + Pf6N2E2_3463 0.27 +1.2 4,044,492 + Pf6N2E2_3463 0.27 +0.5 4,044,492 + Pf6N2E2_3463 0.27 +1.0 4,044,493 - Pf6N2E2_3463 0.27 +0.2 4,044,499 - Pf6N2E2_3463 0.27 +1.3 4,044,555 + Pf6N2E2_3463 0.31 +0.5 4,044,555 + Pf6N2E2_3463 0.31 +1.6 4,044,555 + Pf6N2E2_3463 0.31 -0.3 4,044,556 - Pf6N2E2_3463 0.31 +1.1 4,044,754 - Pf6N2E2_3463 0.46 +2.2 4,044,754 - Pf6N2E2_3463 0.46 +0.1 4,044,754 - Pf6N2E2_3463 0.46 -0.8 4,044,900 + Pf6N2E2_3463 0.56 +0.9 4,044,900 + Pf6N2E2_3463 0.56 +0.8 4,044,900 + Pf6N2E2_3463 0.56 +0.3 4,045,021 - Pf6N2E2_3463 0.65 -0.1 4,045,021 - Pf6N2E2_3463 0.65 -1.1 4,045,077 + Pf6N2E2_3463 0.69 -0.3 4,045,225 - Pf6N2E2_3463 0.80 -0.6 4,045,317 + Pf6N2E2_3463 0.87 +0.1 4,045,317 + Pf6N2E2_3463 0.87 +1.0 4,045,317 + Pf6N2E2_3463 0.87 +0.5 4,045,318 - Pf6N2E2_3463 0.87 +0.9 4,045,407 + -0.2 4,045,407 + +0.7 4,045,408 - +0.8 4,045,498 + +0.8 4,045,499 - +0.2 4,045,499 - -0.9 4,045,531 + -1.4 4,045,531 + -0.1 4,045,532 - +0.4 4,045,532 - +1.7 4,045,532 - -1.0 4,045,532 - -1.1 4,045,532 - +1.2 4,045,573 - -2.7 4,045,599 + +0.5 4,045,648 - +0.1 4,045,648 - +0.4 4,045,834 + Pf6N2E2_3464 0.25 -0.3 4,045,834 + Pf6N2E2_3464 0.25 -0.2 4,045,834 + Pf6N2E2_3464 0.25 +0.5 4,045,834 + Pf6N2E2_3464 0.25 -0.7 4,045,853 + Pf6N2E2_3464 0.27 +0.1 4,045,853 + Pf6N2E2_3464 0.27 -0.4 4,045,854 - Pf6N2E2_3464 0.28 -1.8 4,045,854 - Pf6N2E2_3464 0.28 +0.4 4,046,084 + Pf6N2E2_3464 0.53 -1.5 4,046,084 + Pf6N2E2_3464 0.53 +0.8 4,046,084 + Pf6N2E2_3464 0.53 -1.1 4,046,084 + Pf6N2E2_3464 0.53 +0.9 4,046,084 + Pf6N2E2_3464 0.53 +1.1 4,046,084 + Pf6N2E2_3464 0.53 +1.4 4,046,119 + Pf6N2E2_3464 0.56 +0.2 4,046,131 + Pf6N2E2_3464 0.58 -0.4 4,046,131 + Pf6N2E2_3464 0.58 -0.5 4,046,132 - Pf6N2E2_3464 0.58 +0.1 4,046,152 + Pf6N2E2_3464 0.60 +1.4 4,046,152 + Pf6N2E2_3464 0.60 +1.1 4,046,153 - Pf6N2E2_3464 0.60 -0.9 4,046,153 - Pf6N2E2_3464 0.60 -0.2 4,046,153 - Pf6N2E2_3464 0.60 +0.0 4,046,179 + Pf6N2E2_3464 0.63 -1.0 4,046,179 + Pf6N2E2_3464 0.63 +0.7 4,046,179 + Pf6N2E2_3464 0.63 -0.3 4,046,179 + Pf6N2E2_3464 0.63 +0.9 4,046,179 + Pf6N2E2_3464 0.63 -0.6 4,046,180 - Pf6N2E2_3464 0.63 +0.2 4,046,262 - Pf6N2E2_3464 0.72 +0.8 4,046,262 - Pf6N2E2_3464 0.72 +0.3 4,046,344 + Pf6N2E2_3464 0.81 -0.1 4,046,344 + Pf6N2E2_3464 0.81 -1.1 4,046,344 + Pf6N2E2_3464 0.81 +0.5 4,046,344 + Pf6N2E2_3464 0.81 -0.5 4,046,345 - Pf6N2E2_3464 0.81 +0.9 4,046,345 - Pf6N2E2_3464 0.81 +1.0 4,046,345 - Pf6N2E2_3464 0.81 +0.2 4,046,353 + Pf6N2E2_3464 0.82 -0.2 4,046,353 + Pf6N2E2_3464 0.82 +0.3 4,046,368 + Pf6N2E2_3464 0.83 -0.4 4,046,368 + Pf6N2E2_3464 0.83 +0.8 4,046,368 + Pf6N2E2_3464 0.83 -0.4 4,046,428 + Pf6N2E2_3464 0.90 -1.1 4,046,428 + Pf6N2E2_3464 0.90 +0.5 4,046,429 - +0.1 4,046,429 - +0.4
Or see this region's nucleotide sequence