Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3048

Experiment: L-Leucine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_3046 and Pf6N2E2_3047 are separated by 8 nucleotidesPf6N2E2_3047 and Pf6N2E2_3048 are separated by 171 nucleotidesPf6N2E2_3048 and Pf6N2E2_3049 are separated by 204 nucleotides Pf6N2E2_3046 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,529,910 to 3,530,605 _3046 Pf6N2E2_3047 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,530,614 to 3,530,892 _3047 Pf6N2E2_3048 - Enolase (EC 4.2.1.11), at 3,531,064 to 3,532,353 _3048 Pf6N2E2_3049 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 3,532,558 to 3,533,403 _3049 Position (kb) 3531 3532 3533Strain fitness (log2 ratio) -2 -1 0 1at 3531.036 kb on - strandat 3531.036 kb on - strandat 3531.059 kb on - strandat 3531.059 kb on - strandat 3531.093 kb on - strandat 3531.093 kb on - strandat 3531.093 kb on - strandat 3531.093 kb on - strandat 3531.093 kb on - strandat 3532.379 kb on - strandat 3532.379 kb on - strandat 3532.379 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
remove
3,531,036 - +0.7
3,531,036 - -0.3
3,531,059 - -1.8
3,531,059 - -0.3
3,531,093 - +0.1
3,531,093 - -0.8
3,531,093 - +0.1
3,531,093 - +0.1
3,531,093 - +0.3
3,532,379 - -0.5
3,532,379 - +0.1
3,532,379 - -0.0

Or see this region's nucleotide sequence