Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2924

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2922 and Pf6N2E2_2923 overlap by 18 nucleotidesPf6N2E2_2923 and Pf6N2E2_2924 overlap by 4 nucleotidesPf6N2E2_2924 and Pf6N2E2_2925 overlap by 4 nucleotidesPf6N2E2_2925 and Pf6N2E2_2926 are separated by 0 nucleotides Pf6N2E2_2922 - hypothetical protein, at 3,415,998 to 3,416,270 _2922 Pf6N2E2_2923 - ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data), at 3,416,253 to 3,417,176 _2923 Pf6N2E2_2924 - ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, permease component 2 LivM (from data), at 3,417,173 to 3,418,429 _2924 Pf6N2E2_2925 - ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 1 LivG (from data), at 3,418,426 to 3,419,193 _2925 Pf6N2E2_2926 - ABC transporter for L-leucine/L-isoleucine/L-phenylalanine/D-alanine, ATPase component 2 LivF (from data), at 3,419,194 to 3,419,895 _2926 Position (kb) 3417 3418 3419Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3416.229 kb on + strand, within Pf6N2E2_2922at 3416.230 kb on - strand, within Pf6N2E2_2922at 3416.265 kb on + strandat 3416.265 kb on + strandat 3416.266 kb on - strandat 3416.266 kb on - strandat 3416.266 kb on - strandat 3416.266 kb on - strandat 3416.313 kb on + strandat 3416.313 kb on + strandat 3416.313 kb on + strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.314 kb on - strandat 3416.334 kb on + strandat 3416.335 kb on - strandat 3416.336 kb on + strandat 3416.337 kb on - strandat 3416.337 kb on - strandat 3416.337 kb on - strandat 3416.337 kb on - strandat 3416.337 kb on - strandat 3416.347 kb on - strand, within Pf6N2E2_2923at 3416.347 kb on - strand, within Pf6N2E2_2923at 3416.388 kb on + strand, within Pf6N2E2_2923at 3416.388 kb on + strand, within Pf6N2E2_2923at 3416.388 kb on + strand, within Pf6N2E2_2923at 3416.388 kb on + strand, within Pf6N2E2_2923at 3416.388 kb on + strand, within Pf6N2E2_2923at 3416.388 kb on + strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.389 kb on - strand, within Pf6N2E2_2923at 3416.403 kb on + strand, within Pf6N2E2_2923at 3416.404 kb on - strand, within Pf6N2E2_2923at 3416.404 kb on - strand, within Pf6N2E2_2923at 3416.404 kb on - strand, within Pf6N2E2_2923at 3416.404 kb on - strand, within Pf6N2E2_2923at 3416.404 kb on - strand, within Pf6N2E2_2923at 3416.508 kb on + strand, within Pf6N2E2_2923at 3416.712 kb on + strand, within Pf6N2E2_2923at 3416.712 kb on + strand, within Pf6N2E2_2923at 3416.712 kb on + strand, within Pf6N2E2_2923at 3416.928 kb on + strand, within Pf6N2E2_2923at 3416.929 kb on - strand, within Pf6N2E2_2923at 3417.084 kb on + strandat 3417.084 kb on + strandat 3417.084 kb on + strandat 3417.085 kb on - strandat 3417.085 kb on - strandat 3417.172 kb on + strandat 3417.172 kb on + strandat 3417.172 kb on + strandat 3417.173 kb on - strandat 3417.173 kb on - strandat 3417.173 kb on - strandat 3417.178 kb on + strandat 3417.179 kb on - strandat 3417.179 kb on - strandat 3417.179 kb on - strandat 3417.179 kb on - strandat 3417.179 kb on - strandat 3417.247 kb on + strandat 3417.248 kb on - strandat 3417.248 kb on - strandat 3417.265 kb on + strandat 3417.539 kb on + strand, within Pf6N2E2_2924at 3417.539 kb on + strand, within Pf6N2E2_2924at 3417.539 kb on + strand, within Pf6N2E2_2924at 3417.539 kb on + strand, within Pf6N2E2_2924at 3417.539 kb on + strand, within Pf6N2E2_2924at 3417.539 kb on + strand, within Pf6N2E2_2924at 3417.540 kb on - strand, within Pf6N2E2_2924at 3417.540 kb on - strand, within Pf6N2E2_2924at 3417.540 kb on - strand, within Pf6N2E2_2924at 3417.574 kb on - strand, within Pf6N2E2_2924at 3417.614 kb on + strand, within Pf6N2E2_2924at 3417.614 kb on + strand, within Pf6N2E2_2924at 3417.614 kb on + strand, within Pf6N2E2_2924at 3417.630 kb on - strand, within Pf6N2E2_2924at 3417.630 kb on - strand, within Pf6N2E2_2924at 3417.635 kb on + strand, within Pf6N2E2_2924at 3417.635 kb on + strand, within Pf6N2E2_2924at 3417.635 kb on + strand, within Pf6N2E2_2924at 3417.636 kb on - strand, within Pf6N2E2_2924at 3417.636 kb on - strand, within Pf6N2E2_2924at 3417.636 kb on - strand, within Pf6N2E2_2924at 3417.636 kb on - strand, within Pf6N2E2_2924at 3417.653 kb on + strand, within Pf6N2E2_2924at 3417.653 kb on + strand, within Pf6N2E2_2924at 3417.654 kb on - strand, within Pf6N2E2_2924at 3417.654 kb on - strand, within Pf6N2E2_2924at 3417.756 kb on - strand, within Pf6N2E2_2924at 3417.756 kb on - strand, within Pf6N2E2_2924at 3417.768 kb on + strand, within Pf6N2E2_2924at 3417.768 kb on + strand, within Pf6N2E2_2924at 3417.890 kb on - strand, within Pf6N2E2_2924at 3417.924 kb on - strand, within Pf6N2E2_2924at 3417.924 kb on - strand, within Pf6N2E2_2924at 3417.938 kb on + strand, within Pf6N2E2_2924at 3417.938 kb on + strand, within Pf6N2E2_2924at 3417.938 kb on + strand, within Pf6N2E2_2924at 3417.938 kb on + strand, within Pf6N2E2_2924at 3417.938 kb on + strand, within Pf6N2E2_2924at 3417.938 kb on + strand, within Pf6N2E2_2924at 3417.939 kb on - strand, within Pf6N2E2_2924at 3417.939 kb on - strand, within Pf6N2E2_2924at 3417.939 kb on - strand, within Pf6N2E2_2924at 3417.969 kb on - strand, within Pf6N2E2_2924at 3417.969 kb on - strand, within Pf6N2E2_2924at 3417.969 kb on - strand, within Pf6N2E2_2924at 3418.397 kb on - strandat 3418.588 kb on + strand, within Pf6N2E2_2925at 3418.588 kb on + strand, within Pf6N2E2_2925at 3418.588 kb on + strand, within Pf6N2E2_2925at 3418.588 kb on + strand, within Pf6N2E2_2925at 3418.641 kb on - strand, within Pf6N2E2_2925at 3418.673 kb on + strand, within Pf6N2E2_2925at 3418.822 kb on + strand, within Pf6N2E2_2925at 3419.191 kb on + strandat 3419.191 kb on + strandat 3419.191 kb on + strandat 3419.191 kb on + strandat 3419.192 kb on - strandat 3419.225 kb on - strandat 3419.371 kb on + strand, within Pf6N2E2_2926at 3419.371 kb on + strand, within Pf6N2E2_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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3,416,229 + Pf6N2E2_2922 0.85 +1.6
3,416,230 - Pf6N2E2_2922 0.85 -1.8
3,416,265 + -1.4
3,416,265 + -1.9
3,416,266 - -2.0
3,416,266 - -1.8
3,416,266 - -1.1
3,416,266 - -1.5
3,416,313 + -2.5
3,416,313 + -1.1
3,416,313 + -2.3
3,416,314 - -2.9
3,416,314 - -1.5
3,416,314 - -2.3
3,416,314 - -2.5
3,416,314 - -2.6
3,416,314 - -3.4
3,416,314 - -2.9
3,416,314 - -1.6
3,416,334 + -1.1
3,416,335 - -1.9
3,416,336 + -3.2
3,416,337 - -1.7
3,416,337 - -0.6
3,416,337 - -2.2
3,416,337 - -2.4
3,416,337 - -2.6
3,416,347 - Pf6N2E2_2923 0.10 -1.8
3,416,347 - Pf6N2E2_2923 0.10 -0.7
3,416,388 + Pf6N2E2_2923 0.15 -1.4
3,416,388 + Pf6N2E2_2923 0.15 -1.3
3,416,388 + Pf6N2E2_2923 0.15 -1.4
3,416,388 + Pf6N2E2_2923 0.15 -0.8
3,416,388 + Pf6N2E2_2923 0.15 -2.1
3,416,388 + Pf6N2E2_2923 0.15 -0.9
3,416,389 - Pf6N2E2_2923 0.15 -1.8
3,416,389 - Pf6N2E2_2923 0.15 -1.9
3,416,389 - Pf6N2E2_2923 0.15 -3.0
3,416,389 - Pf6N2E2_2923 0.15 -0.9
3,416,389 - Pf6N2E2_2923 0.15 -2.1
3,416,389 - Pf6N2E2_2923 0.15 -3.3
3,416,389 - Pf6N2E2_2923 0.15 -2.4
3,416,389 - Pf6N2E2_2923 0.15 -0.7
3,416,389 - Pf6N2E2_2923 0.15 -0.9
3,416,389 - Pf6N2E2_2923 0.15 -2.6
3,416,389 - Pf6N2E2_2923 0.15 -1.7
3,416,403 + Pf6N2E2_2923 0.16 -2.6
3,416,404 - Pf6N2E2_2923 0.16 +0.6
3,416,404 - Pf6N2E2_2923 0.16 -3.5
3,416,404 - Pf6N2E2_2923 0.16 -0.6
3,416,404 - Pf6N2E2_2923 0.16 -2.0
3,416,404 - Pf6N2E2_2923 0.16 -1.4
3,416,508 + Pf6N2E2_2923 0.28 -1.4
3,416,712 + Pf6N2E2_2923 0.50 -2.3
3,416,712 + Pf6N2E2_2923 0.50 -2.9
3,416,712 + Pf6N2E2_2923 0.50 -2.4
3,416,928 + Pf6N2E2_2923 0.73 -1.8
3,416,929 - Pf6N2E2_2923 0.73 -2.2
3,417,084 + -2.9
3,417,084 + -2.6
3,417,084 + -2.2
3,417,085 - -2.6
3,417,085 - -0.7
3,417,172 + -1.4
3,417,172 + -2.4
3,417,172 + -1.1
3,417,173 - -2.2
3,417,173 - -2.0
3,417,173 - -1.6
3,417,178 + -2.2
3,417,179 - -2.3
3,417,179 - -1.0
3,417,179 - -1.6
3,417,179 - -1.5
3,417,179 - -3.4
3,417,247 + -3.1
3,417,248 - -3.3
3,417,248 - -1.9
3,417,265 + -2.7
3,417,539 + Pf6N2E2_2924 0.29 -3.0
3,417,539 + Pf6N2E2_2924 0.29 -1.5
3,417,539 + Pf6N2E2_2924 0.29 -2.2
3,417,539 + Pf6N2E2_2924 0.29 +0.2
3,417,539 + Pf6N2E2_2924 0.29 -1.7
3,417,539 + Pf6N2E2_2924 0.29 -2.5
3,417,540 - Pf6N2E2_2924 0.29 -2.7
3,417,540 - Pf6N2E2_2924 0.29 -1.4
3,417,540 - Pf6N2E2_2924 0.29 -1.2
3,417,574 - Pf6N2E2_2924 0.32 -2.1
3,417,614 + Pf6N2E2_2924 0.35 -1.8
3,417,614 + Pf6N2E2_2924 0.35 -1.3
3,417,614 + Pf6N2E2_2924 0.35 -2.1
3,417,630 - Pf6N2E2_2924 0.36 +0.0
3,417,630 - Pf6N2E2_2924 0.36 -4.2
3,417,635 + Pf6N2E2_2924 0.37 -2.0
3,417,635 + Pf6N2E2_2924 0.37 -2.1
3,417,635 + Pf6N2E2_2924 0.37 -1.1
3,417,636 - Pf6N2E2_2924 0.37 -1.8
3,417,636 - Pf6N2E2_2924 0.37 -2.3
3,417,636 - Pf6N2E2_2924 0.37 -2.6
3,417,636 - Pf6N2E2_2924 0.37 -1.8
3,417,653 + Pf6N2E2_2924 0.38 -2.4
3,417,653 + Pf6N2E2_2924 0.38 -1.4
3,417,654 - Pf6N2E2_2924 0.38 -1.8
3,417,654 - Pf6N2E2_2924 0.38 -1.4
3,417,756 - Pf6N2E2_2924 0.46 -1.4
3,417,756 - Pf6N2E2_2924 0.46 -1.4
3,417,768 + Pf6N2E2_2924 0.47 -2.7
3,417,768 + Pf6N2E2_2924 0.47 -0.5
3,417,890 - Pf6N2E2_2924 0.57 -1.6
3,417,924 - Pf6N2E2_2924 0.60 -1.3
3,417,924 - Pf6N2E2_2924 0.60 -1.8
3,417,938 + Pf6N2E2_2924 0.61 -1.1
3,417,938 + Pf6N2E2_2924 0.61 -2.8
3,417,938 + Pf6N2E2_2924 0.61 -2.5
3,417,938 + Pf6N2E2_2924 0.61 -1.5
3,417,938 + Pf6N2E2_2924 0.61 -3.1
3,417,938 + Pf6N2E2_2924 0.61 -1.6
3,417,939 - Pf6N2E2_2924 0.61 -2.3
3,417,939 - Pf6N2E2_2924 0.61 -2.8
3,417,939 - Pf6N2E2_2924 0.61 -2.5
3,417,969 - Pf6N2E2_2924 0.63 -0.3
3,417,969 - Pf6N2E2_2924 0.63 -3.1
3,417,969 - Pf6N2E2_2924 0.63 -4.1
3,418,397 - -3.9
3,418,588 + Pf6N2E2_2925 0.21 -0.0
3,418,588 + Pf6N2E2_2925 0.21 -2.2
3,418,588 + Pf6N2E2_2925 0.21 -1.3
3,418,588 + Pf6N2E2_2925 0.21 -1.7
3,418,641 - Pf6N2E2_2925 0.28 -3.3
3,418,673 + Pf6N2E2_2925 0.32 -3.2
3,418,822 + Pf6N2E2_2925 0.52 -2.7
3,419,191 + -1.1
3,419,191 + -1.1
3,419,191 + -1.5
3,419,191 + -3.6
3,419,192 - -3.3
3,419,225 - -2.4
3,419,371 + Pf6N2E2_2926 0.25 -2.2
3,419,371 + Pf6N2E2_2926 0.25 -2.1

Or see this region's nucleotide sequence