Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2191

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2190 and Pf6N2E2_2191 are separated by 198 nucleotidesPf6N2E2_2191 and Pf6N2E2_2192 are separated by 11 nucleotides Pf6N2E2_2190 - Acetoacetyl-CoA synthetase (EC 6.2.1.16) / Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 2,594,816 to 2,596,513 _2190 Pf6N2E2_2191 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data), at 2,596,712 to 2,597,875 _2191 Pf6N2E2_2192 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 2,597,887 to 2,599,494 _2192 Position (kb) 2596 2597 2598Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2595.741 kb on + strand, within Pf6N2E2_2190at 2595.741 kb on + strand, within Pf6N2E2_2190at 2595.804 kb on + strand, within Pf6N2E2_2190at 2595.804 kb on + strand, within Pf6N2E2_2190at 2595.805 kb on - strand, within Pf6N2E2_2190at 2595.821 kb on - strand, within Pf6N2E2_2190at 2595.873 kb on + strand, within Pf6N2E2_2190at 2595.873 kb on + strand, within Pf6N2E2_2190at 2595.874 kb on - strand, within Pf6N2E2_2190at 2595.874 kb on - strand, within Pf6N2E2_2190at 2595.874 kb on - strand, within Pf6N2E2_2190at 2596.164 kb on + strand, within Pf6N2E2_2190at 2596.165 kb on - strand, within Pf6N2E2_2190at 2596.165 kb on - strand, within Pf6N2E2_2190at 2596.165 kb on - strand, within Pf6N2E2_2190at 2596.185 kb on + strand, within Pf6N2E2_2190at 2596.302 kb on - strand, within Pf6N2E2_2190at 2596.302 kb on - strand, within Pf6N2E2_2190at 2596.357 kb on + strandat 2596.358 kb on - strandat 2596.358 kb on - strandat 2596.358 kb on - strandat 2596.358 kb on - strandat 2596.358 kb on - strandat 2596.358 kb on - strandat 2596.359 kb on + strandat 2596.479 kb on + strandat 2596.479 kb on + strandat 2596.480 kb on - strandat 2596.480 kb on - strandat 2596.532 kb on + strandat 2596.533 kb on - strandat 2596.533 kb on - strandat 2596.536 kb on - strandat 2596.545 kb on - strandat 2596.584 kb on + strandat 2596.584 kb on + strandat 2596.585 kb on - strandat 2596.585 kb on - strandat 2596.585 kb on - strandat 2596.585 kb on - strandat 2596.585 kb on - strandat 2596.611 kb on - strandat 2596.611 kb on - strandat 2596.611 kb on - strandat 2596.611 kb on - strandat 2596.643 kb on + strandat 2596.653 kb on + strandat 2596.654 kb on - strandat 2596.901 kb on + strand, within Pf6N2E2_2191at 2596.922 kb on + strand, within Pf6N2E2_2191at 2596.923 kb on - strand, within Pf6N2E2_2191at 2596.986 kb on - strand, within Pf6N2E2_2191at 2596.986 kb on - strand, within Pf6N2E2_2191at 2597.054 kb on + strand, within Pf6N2E2_2191at 2597.055 kb on - strand, within Pf6N2E2_2191at 2597.168 kb on + strand, within Pf6N2E2_2191at 2597.168 kb on + strand, within Pf6N2E2_2191at 2597.168 kb on + strand, within Pf6N2E2_2191at 2597.169 kb on - strand, within Pf6N2E2_2191at 2597.169 kb on - strand, within Pf6N2E2_2191at 2597.169 kb on - strand, within Pf6N2E2_2191at 2597.169 kb on - strand, within Pf6N2E2_2191at 2597.169 kb on - strand, within Pf6N2E2_2191at 2597.222 kb on + strand, within Pf6N2E2_2191at 2597.222 kb on + strand, within Pf6N2E2_2191at 2597.223 kb on - strand, within Pf6N2E2_2191at 2597.223 kb on - strand, within Pf6N2E2_2191at 2597.232 kb on - strand, within Pf6N2E2_2191at 2597.232 kb on - strand, within Pf6N2E2_2191at 2597.317 kb on + strand, within Pf6N2E2_2191at 2597.318 kb on - strand, within Pf6N2E2_2191at 2597.318 kb on - strand, within Pf6N2E2_2191at 2597.516 kb on + strand, within Pf6N2E2_2191at 2597.517 kb on - strand, within Pf6N2E2_2191at 2597.517 kb on - strand, within Pf6N2E2_2191at 2597.517 kb on - strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.591 kb on + strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.592 kb on - strand, within Pf6N2E2_2191at 2597.624 kb on + strand, within Pf6N2E2_2191at 2597.624 kb on + strand, within Pf6N2E2_2191at 2597.624 kb on + strand, within Pf6N2E2_2191at 2597.624 kb on + strand, within Pf6N2E2_2191at 2597.625 kb on - strand, within Pf6N2E2_2191at 2597.625 kb on - strand, within Pf6N2E2_2191at 2597.690 kb on + strand, within Pf6N2E2_2191at 2597.690 kb on + strand, within Pf6N2E2_2191at 2597.691 kb on - strand, within Pf6N2E2_2191at 2597.753 kb on + strand, within Pf6N2E2_2191at 2597.753 kb on + strand, within Pf6N2E2_2191at 2597.753 kb on + strand, within Pf6N2E2_2191at 2597.753 kb on + strand, within Pf6N2E2_2191at 2597.754 kb on - strand, within Pf6N2E2_2191at 2597.754 kb on - strand, within Pf6N2E2_2191at 2597.754 kb on - strand, within Pf6N2E2_2191at 2597.754 kb on - strand, within Pf6N2E2_2191at 2597.802 kb on - strandat 2598.047 kb on + strandat 2598.048 kb on - strand, within Pf6N2E2_2192at 2598.048 kb on - strand, within Pf6N2E2_2192at 2598.235 kb on + strand, within Pf6N2E2_2192at 2598.235 kb on + strand, within Pf6N2E2_2192at 2598.235 kb on + strand, within Pf6N2E2_2192at 2598.235 kb on + strand, within Pf6N2E2_2192at 2598.235 kb on + strand, within Pf6N2E2_2192at 2598.236 kb on - strand, within Pf6N2E2_2192at 2598.307 kb on + strand, within Pf6N2E2_2192at 2598.307 kb on + strand, within Pf6N2E2_2192at 2598.308 kb on - strand, within Pf6N2E2_2192at 2598.466 kb on + strand, within Pf6N2E2_2192at 2598.466 kb on + strand, within Pf6N2E2_2192at 2598.466 kb on + strand, within Pf6N2E2_2192at 2598.466 kb on + strand, within Pf6N2E2_2192at 2598.466 kb on + strand, within Pf6N2E2_2192at 2598.467 kb on - strand, within Pf6N2E2_2192at 2598.467 kb on - strand, within Pf6N2E2_2192at 2598.467 kb on - strand, within Pf6N2E2_2192at 2598.467 kb on - strand, within Pf6N2E2_2192at 2598.467 kb on - strand, within Pf6N2E2_2192at 2598.467 kb on - strand, within Pf6N2E2_2192at 2598.628 kb on + strand, within Pf6N2E2_2192at 2598.628 kb on + strand, within Pf6N2E2_2192at 2598.629 kb on - strand, within Pf6N2E2_2192at 2598.755 kb on - strand, within Pf6N2E2_2192

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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2,595,741 + Pf6N2E2_2190 0.54 -0.6
2,595,741 + Pf6N2E2_2190 0.54 +0.3
2,595,804 + Pf6N2E2_2190 0.58 +0.8
2,595,804 + Pf6N2E2_2190 0.58 +1.1
2,595,805 - Pf6N2E2_2190 0.58 +0.5
2,595,821 - Pf6N2E2_2190 0.59 +1.5
2,595,873 + Pf6N2E2_2190 0.62 +0.7
2,595,873 + Pf6N2E2_2190 0.62 +1.0
2,595,874 - Pf6N2E2_2190 0.62 +1.2
2,595,874 - Pf6N2E2_2190 0.62 +1.4
2,595,874 - Pf6N2E2_2190 0.62 -0.4
2,596,164 + Pf6N2E2_2190 0.79 +1.8
2,596,165 - Pf6N2E2_2190 0.79 +2.0
2,596,165 - Pf6N2E2_2190 0.79 +0.6
2,596,165 - Pf6N2E2_2190 0.79 +0.3
2,596,185 + Pf6N2E2_2190 0.81 +0.9
2,596,302 - Pf6N2E2_2190 0.88 -0.8
2,596,302 - Pf6N2E2_2190 0.88 -0.7
2,596,357 + +0.2
2,596,358 - -0.5
2,596,358 - +0.8
2,596,358 - +1.2
2,596,358 - +0.8
2,596,358 - -0.2
2,596,358 - -0.5
2,596,359 + +0.7
2,596,479 + +0.1
2,596,479 + +1.8
2,596,480 - +1.2
2,596,480 - -0.6
2,596,532 + +0.3
2,596,533 - -1.0
2,596,533 - +0.5
2,596,536 - +0.8
2,596,545 - -1.2
2,596,584 + -0.2
2,596,584 + -0.1
2,596,585 - -0.5
2,596,585 - -1.2
2,596,585 - -1.9
2,596,585 - -0.1
2,596,585 - -1.4
2,596,611 - -0.8
2,596,611 - +0.4
2,596,611 - +0.8
2,596,611 - -0.2
2,596,643 + -4.2
2,596,653 + -0.5
2,596,654 - -3.4
2,596,901 + Pf6N2E2_2191 0.16 -1.5
2,596,922 + Pf6N2E2_2191 0.18 -3.1
2,596,923 - Pf6N2E2_2191 0.18 -3.3
2,596,986 - Pf6N2E2_2191 0.24 -1.5
2,596,986 - Pf6N2E2_2191 0.24 -3.7
2,597,054 + Pf6N2E2_2191 0.29 -1.9
2,597,055 - Pf6N2E2_2191 0.29 -2.5
2,597,168 + Pf6N2E2_2191 0.39 -2.9
2,597,168 + Pf6N2E2_2191 0.39 -1.2
2,597,168 + Pf6N2E2_2191 0.39 -1.8
2,597,169 - Pf6N2E2_2191 0.39 -2.8
2,597,169 - Pf6N2E2_2191 0.39 -2.6
2,597,169 - Pf6N2E2_2191 0.39 -4.2
2,597,169 - Pf6N2E2_2191 0.39 -5.0
2,597,169 - Pf6N2E2_2191 0.39 -1.8
2,597,222 + Pf6N2E2_2191 0.44 -1.5
2,597,222 + Pf6N2E2_2191 0.44 -3.5
2,597,223 - Pf6N2E2_2191 0.44 -2.5
2,597,223 - Pf6N2E2_2191 0.44 -3.3
2,597,232 - Pf6N2E2_2191 0.45 -1.8
2,597,232 - Pf6N2E2_2191 0.45 -2.2
2,597,317 + Pf6N2E2_2191 0.52 -4.0
2,597,318 - Pf6N2E2_2191 0.52 -3.2
2,597,318 - Pf6N2E2_2191 0.52 -2.8
2,597,516 + Pf6N2E2_2191 0.69 -1.8
2,597,517 - Pf6N2E2_2191 0.69 -2.6
2,597,517 - Pf6N2E2_2191 0.69 -3.1
2,597,517 - Pf6N2E2_2191 0.69 -3.8
2,597,591 + Pf6N2E2_2191 0.76 -2.8
2,597,591 + Pf6N2E2_2191 0.76 +0.4
2,597,591 + Pf6N2E2_2191 0.76 -3.5
2,597,591 + Pf6N2E2_2191 0.76 -4.3
2,597,591 + Pf6N2E2_2191 0.76 -1.5
2,597,591 + Pf6N2E2_2191 0.76 -4.4
2,597,591 + Pf6N2E2_2191 0.76 -1.2
2,597,591 + Pf6N2E2_2191 0.76 -3.0
2,597,591 + Pf6N2E2_2191 0.76 -2.5
2,597,591 + Pf6N2E2_2191 0.76 -2.8
2,597,591 + Pf6N2E2_2191 0.76 -0.8
2,597,591 + Pf6N2E2_2191 0.76 -1.5
2,597,591 + Pf6N2E2_2191 0.76 -4.0
2,597,592 - Pf6N2E2_2191 0.76 -3.6
2,597,592 - Pf6N2E2_2191 0.76 -3.4
2,597,592 - Pf6N2E2_2191 0.76 -1.7
2,597,592 - Pf6N2E2_2191 0.76 -3.8
2,597,592 - Pf6N2E2_2191 0.76 -3.2
2,597,592 - Pf6N2E2_2191 0.76 -2.0
2,597,592 - Pf6N2E2_2191 0.76 -2.2
2,597,624 + Pf6N2E2_2191 0.78 -2.5
2,597,624 + Pf6N2E2_2191 0.78 -2.4
2,597,624 + Pf6N2E2_2191 0.78 -3.1
2,597,624 + Pf6N2E2_2191 0.78 -4.5
2,597,625 - Pf6N2E2_2191 0.78 -2.3
2,597,625 - Pf6N2E2_2191 0.78 -2.0
2,597,690 + Pf6N2E2_2191 0.84 -2.0
2,597,690 + Pf6N2E2_2191 0.84 -4.0
2,597,691 - Pf6N2E2_2191 0.84 -3.7
2,597,753 + Pf6N2E2_2191 0.89 -3.0
2,597,753 + Pf6N2E2_2191 0.89 -0.5
2,597,753 + Pf6N2E2_2191 0.89 -5.2
2,597,753 + Pf6N2E2_2191 0.89 -3.0
2,597,754 - Pf6N2E2_2191 0.90 -2.1
2,597,754 - Pf6N2E2_2191 0.90 -4.2
2,597,754 - Pf6N2E2_2191 0.90 -2.4
2,597,754 - Pf6N2E2_2191 0.90 -4.2
2,597,802 - -3.6
2,598,047 + -2.8
2,598,048 - Pf6N2E2_2192 0.10 -2.9
2,598,048 - Pf6N2E2_2192 0.10 -3.1
2,598,235 + Pf6N2E2_2192 0.22 -3.1
2,598,235 + Pf6N2E2_2192 0.22 -3.8
2,598,235 + Pf6N2E2_2192 0.22 -2.8
2,598,235 + Pf6N2E2_2192 0.22 -3.9
2,598,235 + Pf6N2E2_2192 0.22 -3.6
2,598,236 - Pf6N2E2_2192 0.22 -2.4
2,598,307 + Pf6N2E2_2192 0.26 -1.8
2,598,307 + Pf6N2E2_2192 0.26 -2.6
2,598,308 - Pf6N2E2_2192 0.26 -2.5
2,598,466 + Pf6N2E2_2192 0.36 -3.2
2,598,466 + Pf6N2E2_2192 0.36 -0.8
2,598,466 + Pf6N2E2_2192 0.36 -1.8
2,598,466 + Pf6N2E2_2192 0.36 -3.8
2,598,466 + Pf6N2E2_2192 0.36 -2.6
2,598,467 - Pf6N2E2_2192 0.36 -4.0
2,598,467 - Pf6N2E2_2192 0.36 -2.4
2,598,467 - Pf6N2E2_2192 0.36 -2.8
2,598,467 - Pf6N2E2_2192 0.36 -2.8
2,598,467 - Pf6N2E2_2192 0.36 -4.2
2,598,467 - Pf6N2E2_2192 0.36 -3.7
2,598,628 + Pf6N2E2_2192 0.46 -2.5
2,598,628 + Pf6N2E2_2192 0.46 -3.9
2,598,629 - Pf6N2E2_2192 0.46 -3.7
2,598,755 - Pf6N2E2_2192 0.54 -3.2

Or see this region's nucleotide sequence