Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2111 and Pf6N2E2_2112 are separated by 35 nucleotides Pf6N2E2_2112 and Pf6N2E2_2113 are separated by 11 nucleotides Pf6N2E2_2113 and Pf6N2E2_2114 are separated by 688 nucleotides
Pf6N2E2_2111 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) , at 2,508,111 to 2,508,809
_2111
Pf6N2E2_2112 - Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B (from data) , at 2,508,845 to 2,509,510
_2112
Pf6N2E2_2113 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 2,509,522 to 2,510,703
_2113
Pf6N2E2_2114 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 2,511,392 to 2,512,102
_2114
Position (kb)
2509
2510
2511 Strain fitness (log2 ratio)
-2
-1
0
1 at 2508.744 kb on + strand at 2508.745 kb on - strand at 2508.839 kb on - strand at 2508.839 kb on - strand at 2508.902 kb on + strand at 2508.903 kb on - strand at 2508.903 kb on - strand at 2508.905 kb on + strand at 2508.947 kb on + strand, within Pf6N2E2_2112 at 2508.947 kb on + strand, within Pf6N2E2_2112 at 2508.948 kb on - strand, within Pf6N2E2_2112 at 2509.177 kb on + strand, within Pf6N2E2_2112 at 2509.177 kb on + strand, within Pf6N2E2_2112 at 2509.178 kb on - strand, within Pf6N2E2_2112 at 2509.178 kb on - strand, within Pf6N2E2_2112 at 2509.178 kb on - strand, within Pf6N2E2_2112 at 2509.888 kb on + strand, within Pf6N2E2_2113 at 2509.888 kb on + strand, within Pf6N2E2_2113 at 2509.888 kb on + strand, within Pf6N2E2_2113 at 2509.889 kb on - strand, within Pf6N2E2_2113 at 2510.023 kb on + strand, within Pf6N2E2_2113 at 2510.023 kb on + strand, within Pf6N2E2_2113 at 2510.023 kb on + strand, within Pf6N2E2_2113 at 2510.024 kb on - strand, within Pf6N2E2_2113 at 2510.024 kb on - strand, within Pf6N2E2_2113 at 2511.387 kb on - strand at 2511.387 kb on - strand at 2511.702 kb on + strand, within Pf6N2E2_2114
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 2,508,744 + +0.1 2,508,745 - +0.4 2,508,839 - -0.7 2,508,839 - -1.5 2,508,902 + -1.1 2,508,903 - -1.5 2,508,903 - -0.7 2,508,905 + +0.2 2,508,947 + Pf6N2E2_2112 0.15 -1.1 2,508,947 + Pf6N2E2_2112 0.15 -0.8 2,508,948 - Pf6N2E2_2112 0.15 -1.1 2,509,177 + Pf6N2E2_2112 0.50 -2.5 2,509,177 + Pf6N2E2_2112 0.50 -0.2 2,509,178 - Pf6N2E2_2112 0.50 -1.9 2,509,178 - Pf6N2E2_2112 0.50 -1.2 2,509,178 - Pf6N2E2_2112 0.50 -1.4 2,509,888 + Pf6N2E2_2113 0.31 -0.2 2,509,888 + Pf6N2E2_2113 0.31 +0.3 2,509,888 + Pf6N2E2_2113 0.31 -0.8 2,509,889 - Pf6N2E2_2113 0.31 +0.1 2,510,023 + Pf6N2E2_2113 0.42 +0.4 2,510,023 + Pf6N2E2_2113 0.42 +0.8 2,510,023 + Pf6N2E2_2113 0.42 -1.1 2,510,024 - Pf6N2E2_2113 0.42 -0.3 2,510,024 - Pf6N2E2_2113 0.42 -0.9 2,511,387 - +0.4 2,511,387 - +1.5 2,511,702 + Pf6N2E2_2114 0.44 +0.0
Or see this region's nucleotide sequence