Experiment: L-Leucine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1582 and Pf6N2E2_1583 overlap by 23 nucleotides Pf6N2E2_1583 and Pf6N2E2_1584 are separated by 117 nucleotides
Pf6N2E2_1582 - HlyD family secretion protein, at 1,851,379 to 1,852,695
_1582
Pf6N2E2_1583 - ABC-type protease/lipase transport system, ATPase and permease components, at 1,852,673 to 1,854,457
_1583
Pf6N2E2_1584 - Transcriptional regulator, MarR family / Acetyltransferase (GNAT), at 1,854,575 to 1,855,486
_1584
Position (kb)
1852
1853
1854
1855 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1851.835 kb on - strand, within Pf6N2E2_1582 at 1851.881 kb on + strand, within Pf6N2E2_1582 at 1851.881 kb on + strand, within Pf6N2E2_1582 at 1852.118 kb on + strand, within Pf6N2E2_1582 at 1853.013 kb on + strand, within Pf6N2E2_1583 at 1853.013 kb on + strand, within Pf6N2E2_1583 at 1853.092 kb on - strand, within Pf6N2E2_1583 at 1853.547 kb on + strand, within Pf6N2E2_1583 at 1853.547 kb on + strand, within Pf6N2E2_1583 at 1853.566 kb on + strand, within Pf6N2E2_1583 at 1853.676 kb on + strand, within Pf6N2E2_1583 at 1853.723 kb on - strand, within Pf6N2E2_1583 at 1853.875 kb on - strand, within Pf6N2E2_1583 at 1854.024 kb on + strand, within Pf6N2E2_1583 at 1854.024 kb on + strand, within Pf6N2E2_1583 at 1854.025 kb on - strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.163 kb on + strand, within Pf6N2E2_1583 at 1854.165 kb on + strand, within Pf6N2E2_1583 at 1854.166 kb on - strand, within Pf6N2E2_1583 at 1854.245 kb on + strand, within Pf6N2E2_1583 at 1854.295 kb on + strand at 1854.339 kb on + strand at 1854.340 kb on - strand at 1854.351 kb on - strand at 1854.495 kb on - strand at 1854.519 kb on - strand at 1854.776 kb on + strand, within Pf6N2E2_1584 at 1854.882 kb on - strand, within Pf6N2E2_1584 at 1855.006 kb on - strand, within Pf6N2E2_1584 at 1855.129 kb on - strand, within Pf6N2E2_1584 at 1855.172 kb on + strand, within Pf6N2E2_1584 at 1855.173 kb on - strand, within Pf6N2E2_1584 at 1855.412 kb on + strand at 1855.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C) remove 1,851,835 - Pf6N2E2_1582 0.35 -1.0 1,851,881 + Pf6N2E2_1582 0.38 +1.5 1,851,881 + Pf6N2E2_1582 0.38 +1.0 1,852,118 + Pf6N2E2_1582 0.56 -0.7 1,853,013 + Pf6N2E2_1583 0.19 -0.8 1,853,013 + Pf6N2E2_1583 0.19 -1.3 1,853,092 - Pf6N2E2_1583 0.23 -2.3 1,853,547 + Pf6N2E2_1583 0.49 +1.2 1,853,547 + Pf6N2E2_1583 0.49 -1.4 1,853,566 + Pf6N2E2_1583 0.50 +0.3 1,853,676 + Pf6N2E2_1583 0.56 -0.9 1,853,723 - Pf6N2E2_1583 0.59 +1.4 1,853,875 - Pf6N2E2_1583 0.67 -1.1 1,854,024 + Pf6N2E2_1583 0.76 -1.5 1,854,024 + Pf6N2E2_1583 0.76 -2.7 1,854,025 - Pf6N2E2_1583 0.76 +1.1 1,854,163 + Pf6N2E2_1583 0.83 -0.6 1,854,163 + Pf6N2E2_1583 0.83 +0.3 1,854,163 + Pf6N2E2_1583 0.83 -0.8 1,854,165 + Pf6N2E2_1583 0.84 +1.1 1,854,166 - Pf6N2E2_1583 0.84 +1.3 1,854,245 + Pf6N2E2_1583 0.88 -1.3 1,854,295 + -0.2 1,854,339 + +0.8 1,854,340 - -0.5 1,854,351 - +0.2 1,854,495 - -1.8 1,854,519 - -1.1 1,854,776 + Pf6N2E2_1584 0.22 +0.3 1,854,882 - Pf6N2E2_1584 0.34 -0.5 1,855,006 - Pf6N2E2_1584 0.47 +0.6 1,855,129 - Pf6N2E2_1584 0.61 +1.9 1,855,172 + Pf6N2E2_1584 0.65 -0.4 1,855,173 - Pf6N2E2_1584 0.66 +0.5 1,855,412 + +0.8 1,855,413 - -1.0
Or see this region's nucleotide sequence