Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1397

Experiment: L-Leucine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1395 and Pf6N2E2_1396 overlap by 4 nucleotidesPf6N2E2_1396 and Pf6N2E2_1397 overlap by 4 nucleotidesPf6N2E2_1397 and Pf6N2E2_1398 are separated by 147 nucleotidesPf6N2E2_1398 and Pf6N2E2_1399 are separated by 54 nucleotides Pf6N2E2_1395 - Uncharacterized conserved protein, at 1,635,562 to 1,636,551 _1395 Pf6N2E2_1396 - ABC transporter, ATP-binding protein, at 1,636,548 to 1,637,279 _1396 Pf6N2E2_1397 - ABC transporter permease protein, at 1,637,276 to 1,638,067 _1397 Pf6N2E2_1398 - Rhodanese-related sulfurtransferase, at 1,638,215 to 1,638,748 _1398 Pf6N2E2_1399 - Transcriptional regulator, LuxR family, at 1,638,803 to 1,639,474 _1399 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -1 0 1 2 3at 1636.303 kb on - strand, within Pf6N2E2_1395at 1636.482 kb on - strandat 1636.585 kb on - strandat 1636.585 kb on - strandat 1636.704 kb on + strand, within Pf6N2E2_1396at 1636.704 kb on + strand, within Pf6N2E2_1396at 1636.705 kb on - strand, within Pf6N2E2_1396at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.450 kb on + strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.451 kb on - strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.468 kb on + strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.469 kb on - strand, within Pf6N2E2_1397at 1637.470 kb on + strand, within Pf6N2E2_1397at 1637.470 kb on + strand, within Pf6N2E2_1397at 1637.471 kb on - strand, within Pf6N2E2_1397at 1637.649 kb on - strand, within Pf6N2E2_1397at 1637.676 kb on - strand, within Pf6N2E2_1397at 1637.853 kb on - strand, within Pf6N2E2_1397at 1637.951 kb on + strand, within Pf6N2E2_1397at 1637.952 kb on - strand, within Pf6N2E2_1397at 1638.000 kb on + strandat 1638.001 kb on - strandat 1638.130 kb on + strandat 1638.131 kb on - strandat 1638.184 kb on + strandat 1638.184 kb on + strandat 1638.184 kb on + strandat 1638.185 kb on - strandat 1638.208 kb on - strandat 1638.536 kb on + strand, within Pf6N2E2_1398at 1638.536 kb on + strand, within Pf6N2E2_1398at 1638.596 kb on + strand, within Pf6N2E2_1398at 1638.633 kb on + strand, within Pf6N2E2_1398at 1638.634 kb on - strand, within Pf6N2E2_1398at 1638.657 kb on - strand, within Pf6N2E2_1398at 1638.657 kb on - strand, within Pf6N2E2_1398at 1638.668 kb on + strand, within Pf6N2E2_1398at 1638.668 kb on + strand, within Pf6N2E2_1398at 1638.792 kb on + strandat 1638.812 kb on + strandat 1638.812 kb on + strandat 1638.813 kb on - strandat 1638.813 kb on - strandat 1638.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (C)
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1,636,303 - Pf6N2E2_1395 0.75 -0.3
1,636,482 - +2.2
1,636,585 - +2.5
1,636,585 - +1.4
1,636,704 + Pf6N2E2_1396 0.21 +2.6
1,636,704 + Pf6N2E2_1396 0.21 +1.9
1,636,705 - Pf6N2E2_1396 0.21 -0.1
1,637,450 + Pf6N2E2_1397 0.22 +0.2
1,637,450 + Pf6N2E2_1397 0.22 +1.3
1,637,450 + Pf6N2E2_1397 0.22 +1.7
1,637,450 + Pf6N2E2_1397 0.22 +0.4
1,637,451 - Pf6N2E2_1397 0.22 +1.3
1,637,451 - Pf6N2E2_1397 0.22 +0.7
1,637,451 - Pf6N2E2_1397 0.22 +0.2
1,637,451 - Pf6N2E2_1397 0.22 +3.1
1,637,451 - Pf6N2E2_1397 0.22 +0.7
1,637,451 - Pf6N2E2_1397 0.22 +1.7
1,637,451 - Pf6N2E2_1397 0.22 +1.0
1,637,451 - Pf6N2E2_1397 0.22 +2.0
1,637,451 - Pf6N2E2_1397 0.22 +1.2
1,637,451 - Pf6N2E2_1397 0.22 +2.6
1,637,451 - Pf6N2E2_1397 0.22 +0.4
1,637,451 - Pf6N2E2_1397 0.22 +1.2
1,637,468 + Pf6N2E2_1397 0.24 +0.5
1,637,468 + Pf6N2E2_1397 0.24 +1.2
1,637,468 + Pf6N2E2_1397 0.24 +1.7
1,637,468 + Pf6N2E2_1397 0.24 +1.9
1,637,468 + Pf6N2E2_1397 0.24 +0.9
1,637,468 + Pf6N2E2_1397 0.24 +2.3
1,637,468 + Pf6N2E2_1397 0.24 +2.0
1,637,468 + Pf6N2E2_1397 0.24 +1.9
1,637,468 + Pf6N2E2_1397 0.24 +1.0
1,637,468 + Pf6N2E2_1397 0.24 +1.4
1,637,468 + Pf6N2E2_1397 0.24 +2.2
1,637,468 + Pf6N2E2_1397 0.24 +1.3
1,637,469 - Pf6N2E2_1397 0.24 +1.0
1,637,469 - Pf6N2E2_1397 0.24 +0.0
1,637,469 - Pf6N2E2_1397 0.24 +2.1
1,637,469 - Pf6N2E2_1397 0.24 +1.6
1,637,469 - Pf6N2E2_1397 0.24 +1.7
1,637,469 - Pf6N2E2_1397 0.24 +2.0
1,637,469 - Pf6N2E2_1397 0.24 +2.3
1,637,469 - Pf6N2E2_1397 0.24 +0.7
1,637,469 - Pf6N2E2_1397 0.24 +2.6
1,637,469 - Pf6N2E2_1397 0.24 +0.7
1,637,469 - Pf6N2E2_1397 0.24 +2.2
1,637,469 - Pf6N2E2_1397 0.24 +0.4
1,637,470 + Pf6N2E2_1397 0.24 +1.4
1,637,470 + Pf6N2E2_1397 0.24 +2.7
1,637,471 - Pf6N2E2_1397 0.25 +2.2
1,637,649 - Pf6N2E2_1397 0.47 +1.7
1,637,676 - Pf6N2E2_1397 0.51 -1.0
1,637,853 - Pf6N2E2_1397 0.73 +2.5
1,637,951 + Pf6N2E2_1397 0.85 +1.2
1,637,952 - Pf6N2E2_1397 0.85 +2.1
1,638,000 + +0.2
1,638,001 - +0.9
1,638,130 + +1.1
1,638,131 - +1.6
1,638,184 + +1.4
1,638,184 + +1.2
1,638,184 + +1.3
1,638,185 - +1.7
1,638,208 - +1.2
1,638,536 + Pf6N2E2_1398 0.60 -0.3
1,638,536 + Pf6N2E2_1398 0.60 +2.2
1,638,596 + Pf6N2E2_1398 0.71 +2.2
1,638,633 + Pf6N2E2_1398 0.78 +0.8
1,638,634 - Pf6N2E2_1398 0.78 +0.8
1,638,657 - Pf6N2E2_1398 0.83 +0.9
1,638,657 - Pf6N2E2_1398 0.83 +1.8
1,638,668 + Pf6N2E2_1398 0.85 +0.9
1,638,668 + Pf6N2E2_1398 0.85 +3.5
1,638,792 + +2.2
1,638,812 + +1.0
1,638,812 + +1.0
1,638,813 - +1.6
1,638,813 - +2.2
1,638,814 + +2.3

Or see this region's nucleotide sequence